LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
CTD-2537I9.13
hsa-miR-106b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592252
Biotype: sense_intronic
Gene id: ENSG00000267096
Gene Name: CTD-2537I9.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-617
0.026
1
AP000330.8
hsa-miR-106b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1620-1635
0.011
1
8mer
1541-1560
0.004
0
6mer
675-700
0.004
1
6mer
1858-1876
0.004
0
6mer
2290-2307
0.003
1
RP11-34P13.7
hsa-miR-106b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000466430
Biotype: lincRNA
Gene id: ENSG00000238009
Gene Name: RP11-34P13.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
509-529
0.026
Not Conserved
AC004862.6
hsa-miR-106b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437763
Biotype: antisense
Gene id: ENSG00000232667
Gene Name: AC004862.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1359-1377
0.018
1
6mer
2-15
0.008
4
TP73-AS1
hsa-miR-106b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033712.1
Biotype: antisense
Gene id: NR_033712.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-217
0.023
1
7mer
2258-2285
0.003
0
RP11-863P13.3
hsa-miR-106b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568031
Biotype: lincRNA
Gene id: ENSG00000261327
Gene Name: RP11-863P13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
674-691
0.015
1
6mer
191-206
0.011
2
RP4-671O14.7
hsa-miR-106b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12908-12928
0.008
1
7mer
18056-18078
0.006
0
8mer
9919-9939
0.004
0
8mer
8569-8589
0.003
0
8mer
5721-5738
0.002
Not Conserved
6mer
2154-2167
0.002
3
6mer
14392-14409
0.001
1
AL133245.2
hsa-miR-106b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608925
Biotype: lincRNA
Gene id: ENSG00000272754
Gene Name: AL133245.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1106-1123
0.022
0
8mer
705-725
0.004
Not Conserved
XLOC_012623
hsa-miR-106b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026276
Biotype: transcript isomorph
Gene id: XLOC_012623
Gene Name: XLOC_012623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-32
0.014
0
7mer
115-133
0.012
0
XLOC_011789
hsa-miR-106b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024467
Biotype: transcript isomorph
Gene id: XLOC_011789
Gene Name: XLOC_011789
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1781-1797
0.011
7
8mer
506-523
0.005
0
8mer
824-841
0.004
0
6mer
371-391
0.003
1
6mer
1178-1199
0.002
0
RP1-77H15.1
hsa-miR-106b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580311
Biotype: sense_intronic
Gene id: ENSG00000266803
Gene Name: RP1-77H15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-53
0.012
0
6mer
287-301
0.009
3
6mer
237-257
0.005
1
LINC01498
hsa-miR-106b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502160
Biotype: antisense
Gene id: ENSG00000247213
Gene Name: LINC01498
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2668-2689
0.017
1
7mer
52-66
0.009
0
AC079779.7
hsa-miR-106b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437798
Biotype: antisense
Gene id: ENSG00000227061
Gene Name: AC079779.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4469-4486
0.014
0
8mer
1082-1092
0.012
0
RP11-309L24.4
hsa-miR-106b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3551-3561
0.011
0
7mer
525-544
0.007
Not Conserved
8mer
2320-2339
0.006
2
6mer
2915-2937
0.002
1
RP11-8P11.3
hsa-miR-106b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562031
Biotype: lincRNA
Gene id: ENSG00000260469
Gene Name: RP11-8P11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
323-340
0.020
0
6mer
485-496
0.006
2
RP11-657O9.1
hsa-miR-106b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473001
Biotype: retained_intron
Gene id: ENSG00000240086
Gene Name: RP11-657O9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-439
0.021
0
6mer
300-322
0.004
2
MIAT
hsa-miR-106b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-795
0.016
0
6mer
9851-9864
0.005
1
6mer
3662-3679
0.002
0
6mer
857-868
0.002
1
6mer
5900-5921
0.001
3
6mer
2156-2174
0.001
0
RP11-231E4.2
hsa-miR-106b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562582
Biotype: lincRNA
Gene id: ENSG00000259779
Gene Name: RP11-231E4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-445
0.026
0
RP11-4M23.3
hsa-miR-106b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411815
Biotype: antisense
Gene id: ENSG00000232557
Gene Name: RP11-4M23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-42
0.026
0
XXbac-BPGBPG55C20.2
hsa-miR-106b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4417-4439
0.010
Not Conserved
6mer
5035-5048
0.003
Not Conserved
6mer
1421-1441
0.003
2
6mer
4120-4147
0.002
0
6mer
3519-3535
0.002
0
6mer
1986-2011
0.002
1
6mer
3135-3144
0.002
0
6mer
2322-2347
0.002
0
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