LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
LINC00520
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560267
Biotype: lincRNA
Gene id: ENSG00000258791
Gene Name: LINC00520
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-81
0.027
1
ITGA9-AS1
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450990
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-45
0.021
1
6mer
137-159
0.005
1
SOCS2-AS1
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499137
Biotype: antisense
Gene id: ENSG00000246985
Gene Name: SOCS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1292-1305
0.009
0
8mer
659-679
0.007
0
7mer
2177-2201
0.007
0
7mer
1493-1519
0.003
0
CTA-544A11.1
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3447-3469
0.007
1
8mer
7952-7972
0.005
1
6mer
204-220
0.004
2
6mer
942-964
0.003
1
8mer
4628-4645
0.003
0
6mer
8298-8320
0.002
0
6mer
6897-6912
0.002
1
6mer
5517-5539
0.002
0
RP5-1022J11.2
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416237
Biotype: lincRNA
Gene id: ENSG00000232465
Gene Name: RP5-1022J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-63
0.027
2
RP1-86D1.2
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434560
Biotype: sense_intronic
Gene id: ENSG00000228972
Gene Name: RP1-86D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
258-278
0.019
0
6mer
1752-1771
0.005
0
6mer
1064-1077
0.003
Not Conserved
TP73-AS1
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033709.1
Biotype: antisense
Gene id: NR_033709.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-217
0.023
1
7mer
2917-2944
0.002
0
7mer
4563-4588
0.001
Not Conserved
XLOC_006507
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013201
Biotype: transcript isomorph
Gene id: XLOC_006507
Gene Name: XLOC_006507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6828-6844
0.006
1
8mer
7607-7624
0.005
1
6mer
7147-7166
0.002
2
6mer
2864-2883
0.002
4
6mer
5671-5683
0.002
1
6mer
2332-2347
0.002
1
6mer
3416-3437
0.002
2
6mer
1484-1503
0.002
1
6mer
5192-5214
0.001
0
6mer
7079-7105
0.001
0
LINC01004
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4717-4737
0.006
2
7mer
8400-8419
0.006
0
7mer
4453-4467
0.004
2
6mer
9178-9202
0.004
2
7mer
2739-2761
0.003
1
6mer
6375-6387
0.002
1
XLOC_009530
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020122
Biotype: transcript isomorph
Gene id: XLOC_009530
Gene Name: XLOC_009530
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-71
0.027
0
CMB9-55A18.1
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000601906
Biotype: antisense
Gene id: ENSG00000269570
Gene Name: CMB9-55A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-564
0.021
7
6mer
974-990
0.005
4
AC007750.5
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418968
Biotype: antisense
Gene id: ENSG00000236841
Gene Name: AC007750.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3085-3100
0.010
Not Conserved
6mer
3572-3599
0.006
1
6mer
1010-1022
0.003
1
6mer
2483-2495
0.003
2
6mer
1227-1250
0.003
4
6mer
1561-1580
0.002
6
XLOC_009283
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019480
Biotype: transcript isomorph
Gene id: XLOC_009283
Gene Name: XLOC_009283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1816-1836
0.022
1
6mer
911-927
0.002
0
6mer
1100-1121
0.002
1
XLOC_007171
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015115
Biotype: transcript isomorph
Gene id: XLOC_007171
Gene Name: XLOC_007171
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-79
0.027
1
RP11-388C12.1
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574471
Biotype: lincRNA
Gene id: ENSG00000263063
Gene Name: RP11-388C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-272
0.027
1
LINC00892
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454385
Biotype: antisense
Gene id: ENSG00000233093
Gene Name: LINC00892
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
577-593
0.027
1
RP11-545A16.1
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569644
Biotype: antisense
Gene id: ENSG00000261250
Gene Name: RP11-545A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-206
0.019
0
7mer
3004-3021
0.007
Not Conserved
MIAT
hsa-miR-106b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-743
0.016
0
6mer
9925-9938
0.005
1
6mer
3736-3753
0.002
0
6mer
805-816
0.001
1
6mer
5974-5995
0.001
3
6mer
2230-2248
0.001
0
LINC00996
hsa-miR-106b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000477392
Biotype: lincRNA
Gene id: ENSG00000242258
Gene Name: LINC00996
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1512-1524
0.012
2
6mer
38-64
0.008
1
7mer
858-880
0.006
1
LINC01483
hsa-miR-106b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433856
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2818-2838
0.010
Not Conserved
6mer
1025-1047
0.003
3
6mer
853-872
0.003
2
6mer
467-489
0.003
0
6mer
559-585
0.003
1
8mer
1803-1820
0.003
Not Conserved
6mer
1484-1493
0.002
1
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