LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
SCARNA15
hsa-miR-106b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000607520
Biotype: retained_intron
Gene id: ENSG00000252690
Gene Name: SCARNA15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
643-661
0.012
1
6mer
4313-4322
0.008
2
6mer
3648-3654
0.004
4
6mer
792-807
0.003
1
AC022819.3
hsa-miR-106b-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563495
Biotype: sense_intronic
Gene id: ENSG00000259921
Gene Name: AC022819.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-266
0.010
1
8mer
752-769
0.008
1
6mer
3275-3290
0.003
1
6mer
594-608
0.003
1
6mer
3061-3085
0.003
1
XLOC_001417
hsa-miR-106b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004743
Biotype: transcript isomorph
Gene id: XLOC_001417
Gene Name: XLOC_001417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-249
0.012
0
8mer
1588-1605
0.005
1
6mer
2906-2933
0.004
1
7mer
946-962
0.003
0
6mer
1298-1322
0.002
1
RP11-489E7.1
hsa-miR-106b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521908
Biotype: lincRNA
Gene id: ENSG00000253604
Gene Name: RP11-489E7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-54
0.027
1
SNHG16
hsa-miR-106b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000493536
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-630
0.027
1
RP11-519M16.1
hsa-miR-106b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500092
Biotype: lincRNA
Gene id: ENSG00000246876
Gene Name: RP11-519M16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-812
0.011
0
6mer
10-27
0.009
4
8mer
1743-1762
0.007
0
LOC648987
hsa-miR-106b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-526
0.014
0
7mer
881-890
0.010
1
6mer
996-1011
0.003
0
RP11-806H10.4
hsa-miR-106b-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592569
Biotype: lincRNA
Gene id: ENSG00000266970
Gene Name: RP11-806H10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-579
0.027
1
CTD-3051D23.4
hsa-miR-106b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553344
Biotype: lincRNA
Gene id: ENSG00000258593
Gene Name: CTD-3051D23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-310
0.017
0
8mer
637-661
0.010
0
RP4-717I23.3
hsa-miR-106b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432741
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-251
0.027
3
RP11-537P22.2
hsa-miR-106b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554595
Biotype: sense_intronic
Gene id: ENSG00000258827
Gene Name: RP11-537P22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-18
0.027
1
PWRN2
hsa-miR-106b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3426-3439
0.009
0
7mer
2728-2752
0.008
0
7mer
1508-1533
0.006
Not Conserved
6mer
221-240
0.004
Not Conserved
XLOC_002938
hsa-miR-106b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006322
Biotype: transcript isomorph
Gene id: XLOC_002938
Gene Name: XLOC_002938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1583-1608
0.022
1
6mer
1295-1316
0.005
1
AC008132.15
hsa-miR-106b-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000611876
Biotype: lincRNA
Gene id: ENSG00000182824
Gene Name: AC008132.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1016-1031
0.017
0
6mer
678-692
0.010
0
XLOC_007688
hsa-miR-106b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
967-987
0.014
0
6mer
187-196
0.007
0
6mer
3-13
0.005
Not Conserved
RP11-442O1.4
hsa-miR-106b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612023
Biotype: lincRNA
Gene id: ENSG00000278214
Gene Name: RP11-442O1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-400
0.013
Not Conserved
8mer
1143-1160
0.006
1
7mer
696-713
0.005
0
6mer
1471-1497
0.003
1
AC090587.2
hsa-miR-106b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000507938
Biotype: sense_overlapping
Gene id: ENSG00000250404
Gene Name: AC090587.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2441-2458
0.008
1
8mer
1349-1369
0.006
1
6mer
734-757
0.005
9
6mer
686-704
0.005
8
6mer
529-547
0.003
3
RP3-395M20.9
hsa-miR-106b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424215
Biotype: antisense
Gene id: ENSG00000228037
Gene Name: RP3-395M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-465
0.019
0
6mer
503-519
0.007
0
XLOC_010943
hsa-miR-106b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022641
Biotype: transcript isomorph
Gene id: XLOC_010943
Gene Name: XLOC_010943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-391
0.027
1
AC010907.5
hsa-miR-106b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441632
Biotype: antisense
Gene id: ENSG00000224661
Gene Name: AC010907.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-92
0.027
5
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