LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
MIAT
hsa-miR-106b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-669
0.017
0
6mer
9851-9864
0.005
1
6mer
731-742
0.002
1
6mer
3662-3679
0.002
0
6mer
5900-5921
0.001
3
6mer
2156-2174
0.001
0
LINC01104
hsa-miR-106b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452354
Biotype: lincRNA
Gene id: ENSG00000232084
Gene Name: LINC01104
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
23-38
0.013
6
8mer
2865-2883
0.009
1
6mer
2360-2380
0.003
1
6mer
2470-2485
0.003
1
AC009158.1
hsa-miR-106b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000452511
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
710-725
0.027
4
H19
hsa-miR-106b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000412788
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
655-671
0.024
1
6mer
1992-2010
0.003
1
XLOC_013577
hsa-miR-106b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028233
Biotype: transcript isomorph
Gene id: XLOC_013577
Gene Name: XLOC_013577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1359-1379
0.027
1
LINC00598
hsa-miR-106b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024507.1
Biotype: lincRNA
Gene id: NR_024507.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1920-1939
0.017
0
7mer
1086-1101
0.008
1
6mer
2926-2940
0.002
1
6mer
1911-1932
0.001
1
LINC00598
hsa-miR-106b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024506.1
Biotype: lincRNA
Gene id: NR_024506.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1920-1939
0.016
0
7mer
1086-1101
0.008
1
6mer
2926-2940
0.002
1
6mer
1911-1932
0.001
1
WDFY3-AS2
hsa-miR-106b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000451762
Biotype: antisense
Gene id: ENSG00000180769
Gene Name: WDFY3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5607-5621
0.005
1
6mer
5385-5404
0.004
1
6mer
5112-5127
0.004
1
6mer
5256-5265
0.003
1
6mer
2309-2330
0.002
2
6mer
1464-1482
0.002
1
6mer
2478-2494
0.002
1
6mer
4432-4456
0.002
1
6mer
1589-1606
0.002
0
6mer
3532-3550
0.001
0
6mer
3582-3604
0.001
0
XLOC_007942
hsa-miR-106b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7514-7534
0.013
1
8mer
4496-4510
0.004
1
6mer
6442-6460
0.003
Not Conserved
6mer
1369-1382
0.002
0
6mer
3228-3249
0.002
1
6mer
4861-4873
0.002
2
6mer
6073-6094
0.001
0
6mer
1373-1391
0.001
0
XLOC_001198
hsa-miR-106b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001814
Biotype: transcript isomorph
Gene id: XLOC_001198
Gene Name: XLOC_001198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
953-976
0.021
1
6mer
318-343
0.006
1
RP5-965G21.3
hsa-miR-106b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613361
Biotype: lincRNA
Gene id: ENSG00000277938
Gene Name: RP5-965G21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1834-1854
0.010
0
8mer
1534-1551
0.007
0
8mer
2312-2336
0.005
0
6mer
2265-2282
0.005
1
XLOC_004680
hsa-miR-106b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010211
Biotype: transcript isomorph
Gene id: XLOC_004680
Gene Name: XLOC_004680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-635
0.027
1
LINC00939
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502479
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
579-598
0.016
0
7mer
1330-1343
0.005
1
6mer
4660-4685
0.004
2
6mer
2023-2046
0.002
Not Conserved
RP11-179K3.2
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425902
Biotype: lincRNA
Gene id: ENSG00000224714
Gene Name: RP11-179K3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-93
0.022
1
8mer
1566-1583
0.006
0
XLOC_010574
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021973
Biotype: transcript isomorph
Gene id: XLOC_010574
Gene Name: XLOC_010574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-620
0.027
1
AC007128.1
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424460
Biotype: antisense
Gene id: ENSG00000229970
Gene Name: AC007128.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1072-1087
0.021
9
6mer
1471-1476
0.006
4
AL022344.5
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000439913
Biotype: lincRNA
Gene id: ENSG00000234864
Gene Name: AL022344.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3722-3747
0.018
0
6mer
30-43
0.006
1
6mer
1680-1700
0.002
2
RP1-228P16.8
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-238
0.027
0
XLOC_002368
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005258
Biotype: transcript isomorph
Gene id: XLOC_002368
Gene Name: XLOC_002368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2193-2217
0.014
6
7mer
3655-3669
0.005
1
6mer
1700-1725
0.004
5
6mer
4245-4255
0.003
1
6mer
2808-2826
0.001
1
RP13-650J16.1
hsa-miR-106b-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582558
Biotype: antisense
Gene id: ENSG00000264569
Gene Name: RP13-650J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-133
0.027
1
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