LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
CTD-2561J22.5
hsa-miR-106b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
497-501
0.010
1
6mer
827-848
0.006
1
6mer
2563-2584
0.004
1
6mer
1013-1025
0.004
1
6mer
2219-2234
0.003
1
6mer
2411-2436
0.001
0
RP11-797A18.6
hsa-miR-106b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602975
Biotype: sense_intronic
Gene id: ENSG00000269951
Gene Name: RP11-797A18.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-412
0.023
4
6mer
114-139
0.005
1
LINC00102
hsa-miR-106b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445785
Biotype: lincRNA
Gene id: ENSG00000230542
Gene Name: LINC00102
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-559
0.015
0
7mer
643-648
0.013
1
RP5-837I24.4
hsa-miR-106b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430748
Biotype: antisense
Gene id: ENSG00000236676
Gene Name: RP5-837I24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-57
0.028
4
CASC22
hsa-miR-106b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569713
Biotype: lincRNA
Gene id: ENSG00000260887
Gene Name: CASC22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-376
0.018
3
7mer
235-254
0.010
1
XLOC_005392
hsa-miR-106b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8617-8625
0.015
0
6mer
287-299
0.004
0
6mer
5328-5353
0.002
1
6mer
1580-1606
0.002
0
6mer
3001-3017
0.001
1
6mer
7741-7764
0.001
1
6mer
4129-4153
0.001
0
6mer
3012-3032
0.001
0
XLOC_005972
hsa-miR-106b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013326
Biotype: transcript isomorph
Gene id: XLOC_005972
Gene Name: XLOC_005972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2648-2668
0.012
1
9mer
600-617
0.011
0
8mer
1536-1553
0.005
0
RP11-412D9.4
hsa-miR-106b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000570282
Biotype: antisense
Gene id: ENSG00000260329
Gene Name: RP11-412D9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1363-1384
0.027
1
MIAT
hsa-miR-106b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-669
0.017
0
6mer
9725-9738
0.005
1
6mer
731-742
0.002
1
6mer
3536-3553
0.002
0
6mer
5774-5795
0.001
3
6mer
2030-2048
0.001
0
CTD-2162K18.3
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1417-1434
0.008
0
6mer
11-38
0.007
0
6mer
718-745
0.007
1
6mer
1013-1032
0.005
1
RP11-507K2.6
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000617439
Biotype: sense_intronic
Gene id: ENSG00000278576
Gene Name: RP11-507K2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-310
0.017
1
8mer
637-657
0.007
1
6mer
2281-2285
0.003
1
LOC100128885
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3122-3135
0.013
0
6mer
4293-4307
0.008
0
6mer
3315-3329
0.005
0
6mer
2648-2663
0.001
Not Conserved
RP11-693J15.5
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7978-7996
0.015
0
8mer
4356-4373
0.004
1
7mer
8749-8764
0.003
1
8mer+mismatch
1511-1528
0.002
1
6mer
3575-3594
0.002
1
6mer
8942-8959
0.001
1
RP11-416O18.2
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462382
Biotype: lincRNA
Gene id: ENSG00000240478
Gene Name: RP11-416O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-191
0.027
5
RP11-1140I5.1
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554475
Biotype: antisense
Gene id: ENSG00000259055
Gene Name: RP11-1140I5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1088-1105
0.018
1
6mer
855-870
0.006
1
6mer
376-396
0.004
0
LINC00608
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_024385.1
Biotype: lincRNA
Gene id: NR_024385.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1330-1346
0.027
0
LINC00608
hsa-miR-106b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419101
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1984-2000
0.027
0
AP003774.6
hsa-miR-106b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-712
0.027
1
RP11-529E10.7
hsa-miR-106b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602543
Biotype: lincRNA
Gene id: ENSG00000270090
Gene Name: RP11-529E10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-210
0.027
0
RP11-933H2.4
hsa-miR-106b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000502521
Biotype: antisense
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-243
0.024
2
6mer
770-791
0.003
Not Conserved
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