LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
RP13-650J16.1
hsa-miR-106b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584705
Biotype: antisense
Gene id: ENSG00000264569
Gene Name: RP13-650J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-259
0.018
1
8mer
433-450
0.010
0
TP73-AS1
hsa-miR-106b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419973
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-26
0.028
1
RAP2C-AS1
hsa-miR-106b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000441399
Biotype: antisense
Gene id: ENSG00000232160
Gene Name: RAP2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2114-2132
0.014
1
6mer
3395-3409
0.006
1
6mer
180-203
0.003
0
6mer
1090-1112
0.002
0
6mer
1128-1150
0.001
2
6mer
1172-1193
0.001
0
XLOC_004805
hsa-miR-106b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010927
Biotype: transcript isomorph
Gene id: XLOC_004805
Gene Name: XLOC_004805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-928
0.028
1
RP11-510M2.2
hsa-miR-106b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500612
Biotype: antisense
Gene id: ENSG00000247324
Gene Name: RP11-510M2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2533-2553
0.022
1
8mer
1755-1772
0.006
1
LINC00683
hsa-miR-106b-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579781
Biotype: lincRNA
Gene id: ENSG00000266256
Gene Name: LINC00683
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3408-3425
0.009
0
8mer
2605-2623
0.008
0
6mer
3344-3367
0.006
2
6mer
2944-2948
0.004
0
6mer
2176-2191
0.002
1
RP11-166B2.3
hsa-miR-106b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-870
0.014
0
8mer
84-104
0.014
1
RP11-637A17.2
hsa-miR-106b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502102
Biotype: lincRNA
Gene id: ENSG00000247363
Gene Name: RP11-637A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1280-1292
0.015
3
7mer
8-25
0.013
Not Conserved
MIR1255B1
hsa-miR-106b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439234
Biotype: antisense
Gene id: ENSG00000223770
Gene Name: MIR1255B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2298-2325
0.019
2
7mer
1825-1841
0.007
Not Conserved
6mer
844-859
0.002
0
RP11-796E2.4
hsa-miR-106b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-363
0.011
1
7mer
4408-4434
0.006
0
6mer
4759-4783
0.004
3
7mer
3145-3163
0.003
1
6mer
883-909
0.003
1
6mer
2866-2870
0.002
1
PWARSN
hsa-miR-106b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-177
0.016
2
8mer
1539-1556
0.009
0
7mer
1136-1156
0.003
0
MIAT
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000452429
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
835-852
0.028
0
XLOC_012593
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025154
Biotype: transcript isomorph
Gene id: XLOC_012593
Gene Name: XLOC_012593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-262
0.022
0
6mer
187-211
0.006
0
LINC00029
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370341
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-98
0.028
1
RP11-4O3.1
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507808
Biotype: lincRNA
Gene id: ENSG00000250333
Gene Name: RP11-4O3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
28-48
0.028
1
RP6-24A23.7
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
618-631
0.015
3
6mer
237-263
0.004
1
6mer
4391-4408
0.003
1
6mer
1169-1185
0.002
2
6mer
2147-2165
0.002
2
6mer
1682-1707
0.002
1
CTD-2620I22.3
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596769
Biotype: lincRNA
Gene id: ENSG00000267943
Gene Name: CTD-2620I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3783-3801
0.020
1
6mer
2914-2935
0.004
1
6mer
873-893
0.003
0
6mer
2966-2989
0.001
0
RP11-395P13.1
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511994
Biotype: lincRNA
Gene id: ENSG00000248147
Gene Name: RP11-395P13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
523-540
0.015
10
6mer
218-236
0.006
2
6mer
211-223
0.006
1
XLOC_002585
hsa-miR-106b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6001-6016
0.007
4
8mer
718-738
0.006
1
7mer
4297-4309
0.006
1
6mer
5726-5745
0.005
3
6mer
5773-5786
0.003
1
RP11-282K24.3
hsa-miR-106b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4172-4193
0.013
0
6mer
5378-5389
0.006
0
6mer
4620-4637
0.004
1
6mer
581-598
0.003
1
6mer
3944-3959
0.001
Not Conserved
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