LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
RP11-680F20.10
hsa-miR-106b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564354
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
11-28
0.016
0
6mer
115-131
0.013
0
RP11-266K4.13
hsa-miR-106b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1017-1031
0.022
0
6mer
33-60
0.007
0
MEG3
hsa-miR-106b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000452120
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
965-990
0.022
4
6mer
3619-3645
0.005
4
6mer
2274-2287
0.001
1
BLOC1S5-TXNDC5
hsa-miR-106b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037616.1
Biotype: sense
Gene id: NR_037616.1 (gene)
Gene Name: BLOC1S5-TXNDC5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2567-2593
0.018
8
6mer
61-75
0.004
1
6mer
625-648
0.004
1
6mer
1241-1256
0.001
1
6mer
1897-1912
0.001
1
RP11-415D17.3
hsa-miR-106b-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415457
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-462
0.029
9
XLOC_008274
hsa-miR-106b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
815-826
0.018
1
8mer
1791-1811
0.005
0
7mer
3142-3158
0.002
Not Conserved
6mer
2163-2182
0.002
1
6mer
2069-2083
0.002
0
CTD-2313F11.1
hsa-miR-106b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607910
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-456
0.029
1
RP11-138P22.1
hsa-miR-106b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1478-1493
0.011
0
8mer
2005-2025
0.010
1
6mer
186-209
0.007
5
MIAT
hsa-miR-106b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000413665
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-842
0.025
0
6mer
904-915
0.004
1
RP3-402G11.25
hsa-miR-106b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607943
Biotype: antisense
Gene id: ENSG00000273188
Gene Name: RP3-402G11.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-317
0.022
1
6mer
128-149
0.006
0
RP11-21I10.2
hsa-miR-106b-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514608
Biotype: lincRNA
Gene id: ENSG00000249356
Gene Name: RP11-21I10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-173
0.024
0
6mer
317-330
0.004
0
RP11-799D4.4
hsa-miR-106b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590478
Biotype: antisense
Gene id: ENSG00000266947
Gene Name: RP11-799D4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-585
0.019
1
8mer
1078-1095
0.009
1
LINC00608
hsa-miR-106b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015390.1
Biotype: lincRNA
Gene id: NR_015390.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
854-870
0.028
0
KB-208E9.1
hsa-miR-106b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608615
Biotype: lincRNA
Gene id: ENSG00000272733
Gene Name: KB-208E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-779
0.028
0
PRICKLE2-AS1
hsa-miR-106b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-365
0.010
3
8mer
4392-4410
0.008
2
6mer
950-972
0.003
5
6mer
1663-1674
0.002
7
6mer
1512-1526
0.002
4
6mer
3606-3625
0.002
1
6mer
2363-2379
0.001
0
6mer
3689-3706
0.001
0
LYST-AS1
hsa-miR-106b-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412098
Biotype: antisense
Gene id: ENSG00000229463
Gene Name: LYST-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-69
0.012
0
6mer
436-455
0.009
4
6mer
291-306
0.008
3
HIPK1-AS1
hsa-miR-106b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450706
Biotype: antisense
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-67
0.021
1
8mer
712-732
0.007
1
RP11-48B3.3
hsa-miR-106b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523871
Biotype: lincRNA
Gene id: ENSG00000254162
Gene Name: RP11-48B3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-319
0.010
1
6mer
3244-3269
0.005
1
8mer
1150-1170
0.005
1
6mer
1774-1793
0.003
2
9mer
1714-1733
0.002
0
6mer
2156-2181
0.002
0
6mer
2111-2115
0.001
1
XLOC_007438
hsa-miR-106b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015577
Biotype: transcript isomorph
Gene id: XLOC_007438
Gene Name: XLOC_007438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-164
0.012
2
6mer
6464-6482
0.006
2
6mer
6352-6374
0.005
1
6mer
6224-6249
0.004
1
6mer
4175-4193
0.002
0
XLOC_001358
hsa-miR-106b-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003583
Biotype: transcript isomorph
Gene id: XLOC_001358
Gene Name: XLOC_001358
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1548-1564
0.016
2
7mer
1431-1444
0.012
0
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