LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
LINC01486
hsa-miR-106b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538041
Biotype: lincRNA
Gene id: ENSG00000256560
Gene Name: LINC01486
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-529
0.030
9
ERVH48-1
hsa-miR-106b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1733-1754
0.013
0
6mer
1093-1117
0.009
0
6mer
1575-1588
0.008
0
RP11-159D12.2
hsa-miR-106b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3979-4002
0.019
0
7mer
3675-3693
0.009
1
6mer
2207-2219
0.002
3
XLOC_010289
hsa-miR-106b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021708
Biotype: transcript isomorph
Gene id: XLOC_010289
Gene Name: XLOC_010289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
591-608
0.012
0
8mer
671-691
0.005
0
8mer
1143-1160
0.005
0
6mer
184-202
0.004
0
6mer
969-989
0.004
1
XLOC_009515
hsa-miR-106b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019718
Biotype: transcript isomorph
Gene id: XLOC_009515
Gene Name: XLOC_009515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-68
0.023
2
6mer
550-565
0.004
4
6mer
415-430
0.004
0
XLOC_010808
hsa-miR-106b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022479
Biotype: transcript isomorph
Gene id: XLOC_010808
Gene Name: XLOC_010808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-189
0.030
6
LOC100128573
hsa-miR-106b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_024491.1
Biotype: lincRNA
Gene id: NR_024491.1 (gene)
Gene Name: LOC100128573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-153
0.023
0
6mer
415-441
0.008
0
RP11-216M21.7
hsa-miR-106b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2282-2302
0.011
0
6mer
736-749
0.011
0
6mer
2140-2151
0.008
0
RP11-50C13.2
hsa-miR-106b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561202
Biotype: sense_intronic
Gene id: ENSG00000259476
Gene Name: RP11-50C13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1596-1618
0.015
2
7mer
1292-1305
0.012
4
6mer
1300-1322
0.003
3
CTD-2184D3.7
hsa-miR-106b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560613
Biotype: antisense
Gene id: ENSG00000259709
Gene Name: CTD-2184D3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-383
0.030
1
CTD-2035E11.3
hsa-miR-106b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509036
Biotype: antisense
Gene id: ENSG00000251131
Gene Name: CTD-2035E11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-185
0.030
1
RP11-711K1.8
hsa-miR-106b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612592
Biotype: lincRNA
Gene id: ENSG00000275119
Gene Name: RP11-711K1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
198-223
0.015
0
6mer
387-404
0.015
0
CH17-264L24.1
hsa-miR-106b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8223-8231
0.012
0
8mer
3411-3426
0.004
0
8mer
4747-4764
0.004
0
6mer
880-906
0.003
1
6mer
7121-7142
0.002
0
6mer
6984-7003
0.002
0
6mer
6801-6813
0.001
0
6mer
1990-2011
0.001
0
6mer
4172-4189
0.001
Not Conserved
LINC01360
hsa-miR-106b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440762
Biotype: lincRNA
Gene id: ENSG00000233973
Gene Name: LINC01360
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1251-1272
0.010
0
6mer
3695-3713
0.007
1
8mer
1813-1830
0.005
1
6mer
3415-3437
0.004
1
6mer
3096-3122
0.003
0
6mer
2259-2277
0.001
0
RP11-382B18.4
hsa-miR-106b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602453
Biotype: lincRNA
Gene id: ENSG00000270173
Gene Name: RP11-382B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
801-816
0.017
1
6mer
10-14
0.009
1
6mer
236-262
0.004
0
CTD-2207A17.1
hsa-miR-106b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-57
0.022
1
6mer
2302-2315
0.004
1
6mer
1809-1829
0.003
0
RP11-521O16.1
hsa-miR-106b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567613
Biotype: lincRNA
Gene id: ENSG00000260634
Gene Name: RP11-521O16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-411
0.017
1
6mer
123-142
0.008
1
6mer
357-375
0.006
1
CTD-2313F11.1
hsa-miR-106b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608929
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-296
0.030
1
MIAT
hsa-miR-106b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000436238
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
616-633
0.026
0
6mer
695-706
0.004
1
RP11-588H23.3
hsa-miR-106b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548924
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-556
0.030
1
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