LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
STARD13-AS
hsa-miR-106b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608539
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.031
4
RP11-513I15.6
hsa-miR-106b-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3236-3255
0.010
1
8mer
2245-2268
0.007
1
7mer
6271-6285
0.006
1
6mer
6784-6807
0.005
0
6mer
6228-6245
0.003
2
LAMTOR5-AS1
hsa-miR-106b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608635
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-637
0.022
1
7mer
291-313
0.008
1
RP11-510D19.1
hsa-miR-106b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566582
Biotype: lincRNA
Gene id: ENSG00000260676
Gene Name: RP11-510D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-485
0.028
0
6mer
1380-1407
0.003
1
AC005154.6
hsa-miR-106b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7995-8012
0.004
1
8mer
11878-11895
0.003
1
7mer
12247-12261
0.003
1
6mer
3903-3927
0.003
2
6mer
715-729
0.003
1
6mer
13808-13828
0.002
1
8mer
12161-12178
0.002
1
6mer
9079-9101
0.002
1
7mer
3843-3861
0.002
0
6mer
9858-9881
0.002
1
6mer
13053-13074
0.002
0
6mer
9767-9789
0.001
1
6mer
9707-9723
0.001
1
6mer
7958-7973
0.001
1
ZBED3-AS1
hsa-miR-106b-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514640
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1271-1291
0.024
1
6mer
1236-1248
0.006
1
XLOC_008087
hsa-miR-106b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017273
Biotype: transcript isomorph
Gene id: XLOC_008087
Gene Name: XLOC_008087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-164
0.031
1
XLOC_004767
hsa-miR-106b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010294
Biotype: transcript isomorph
Gene id: XLOC_004767
Gene Name: XLOC_004767
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-134
0.031
0
RP3-405J10.3
hsa-miR-106b-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3453-3473
0.018
4
8mer
4391-4411
0.008
0
6mer
2500-2523
0.002
1
6mer
2780-2806
0.002
2
6mer
2700-2715
0.001
3
LOC285768
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027115.2
Biotype: lincRNA
Gene id: NR_027115.2 (gene)
Gene Name: LOC285768
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1916-1940
0.022
Not Conserved
6mer
108-132
0.003
Not Conserved
6mer
424-443
0.002
Not Conserved
6mer
1174-1191
0.002
Not Conserved
6mer
1019-1035
0.001
Not Conserved
LAMTOR5-AS1
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608486
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
727-741
0.022
1
7mer
493-515
0.009
1
ERICH1-AS1
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520816
Biotype: antisense
Gene id: ENSG00000237647
Gene Name: ERICH1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
659-678
0.028
Not Conserved
6mer
888-914
0.002
Not Conserved
C12orf36
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318426
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1992-2013
0.026
2
7mer
1843-1858
0.003
0
6mer
1971-1989
0.002
Not Conserved
RP11-104L21.3
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610044
Biotype: lincRNA
Gene id: ENSG00000273160
Gene Name: RP11-104L21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-44
0.025
1
6mer
192-200
0.005
0
CTD-2006C1.2
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591898
Biotype: antisense
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-310
0.031
1
GRIK1-AS2
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_033368.1
Biotype: sense
Gene id: NR_033368.1 (gene)
Gene Name: GRIK1-AS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
490-501
0.031
11
RP11-363L24.3
hsa-miR-106b-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523365
Biotype: antisense
Gene id: ENSG00000253961
Gene Name: RP11-363L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
367-386
0.018
1
6mer
8-28
0.009
1
6mer
504-518
0.004
1
RP11-421N8.2
hsa-miR-106b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581844
Biotype: lincRNA
Gene id: ENSG00000264699
Gene Name: RP11-421N8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-368
0.030
1
TMEM161B-AS1
hsa-miR-106b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504636
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
746-769
0.023
2
6mer
828-849
0.005
1
6mer
253-270
0.002
0
GRM5-AS1
hsa-miR-106b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526448
Biotype: antisense
Gene id: ENSG00000255082
Gene Name: GRM5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-324
0.017
2
6mer
148-168
0.008
7
6mer
2393-2410
0.002
5
6mer
2066-2075
0.002
1
6mer
1155-1176
0.002
2
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