LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000633
hsa-miR-106b-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2354-2369
0.019
0
6mer
545-567
0.004
1
8mer
6283-6300
0.004
0
8mer
1893-1910
0.004
0
6mer
2861-2877
0.002
1
RP11-701P16.2
hsa-miR-106b-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508020
Biotype: antisense
Gene id: ENSG00000251139
Gene Name: RP11-701P16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
576-593
0.027
3
7mer
201-225
0.005
0
NEAT1
hsa-miR-106b-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19823-19842
0.007
1
7mer
16526-16548
0.005
1
6mer
18818-18834
0.002
0
8mer
16626-16643
0.002
0
6mer
6205-6220
0.002
0
6mer
3660-3685
0.002
0
6mer
7841-7864
0.002
0
6mer
9070-9083
0.002
0
6mer
1987-2014
0.002
0
6mer
16396-16420
0.002
2
6mer
13250-13275
0.002
0
6mer
10044-10061
0.002
1
6mer
10515-10531
0.001
0
HCG18
hsa-miR-106b-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.022
1
6mer
188-214
0.006
1
6mer
1039-1054
0.003
2
6mer
1304-1308
0.002
0
XLOC_012613
hsa-miR-106b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026244
Biotype: transcript isomorph
Gene id: XLOC_012613
Gene Name: XLOC_012613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-469
0.027
0
6mer
562-572
0.005
0
RP11-674P19.2
hsa-miR-106b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-290
0.016
1
7mer
727-754
0.009
0
7mer
1115-1129
0.006
0
LAMTOR5-AS1
hsa-miR-106b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608719
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-600
0.023
1
7mer
352-374
0.009
1
AP001604.3
hsa-miR-106b-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420186
Biotype: lincRNA
Gene id: ENSG00000231236
Gene Name: AP001604.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1369-1384
0.029
4
7mer
1319-1337
0.003
0
STARD13-AS
hsa-miR-106b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609137
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-72
0.032
4
STARD13-AS
hsa-miR-106b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607944
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.031
4
STARD13-AS
hsa-miR-106b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609108
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.031
4
XLOC_008207
hsa-miR-106b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-608
0.019
3
6mer
214-240
0.004
1
6mer
3890-3907
0.003
1
6mer
1146-1162
0.002
2
6mer
2124-2142
0.002
2
6mer
1659-1684
0.002
1
XLOC_003242
hsa-miR-106b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006651
Biotype: transcript isomorph
Gene id: XLOC_003242
Gene Name: XLOC_003242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-26
0.026
1
6mer
208-219
0.005
0
RP11-34P13.8
hsa-miR-106b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000495576
Biotype: lincRNA
Gene id: ENSG00000239945
Gene Name: RP11-34P13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-273
0.031
Not Conserved
XLOC_012728
hsa-miR-106b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5044-5061
0.009
0
8mer
4241-4259
0.008
0
6mer
4980-5003
0.006
2
6mer
4580-4584
0.004
0
6mer
1370-1392
0.003
2
6mer
3812-3827
0.002
1
RP11-756H6.1
hsa-miR-106b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547552
Biotype: lincRNA
Gene id: ENSG00000258001
Gene Name: RP11-756H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-235
0.031
2
LAMTOR5-AS1
hsa-miR-106b-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608253
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
831-845
0.031
1
RP11-479O17.10
hsa-miR-106b-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608229
Biotype: lincRNA
Gene id: ENSG00000273372
Gene Name: RP11-479O17.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3981-3992
0.010
Not Conserved
8mer
864-884
0.005
Not Conserved
6mer
101-117
0.004
Not Conserved
6mer
4898-4924
0.004
Not Conserved
8mer
1004-1021
0.002
Not Conserved
6mer
763-787
0.002
Not Conserved
6mer
2214-2223
0.002
Not Conserved
6mer
3284-3298
0.001
Not Conserved
6mer
3510-3528
0.001
Not Conserved
RP11-222K16.1
hsa-miR-106b-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607601
Biotype: lincRNA
Gene id: ENSG00000271943
Gene Name: RP11-222K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-227
0.018
1
7mer
24-36
0.013
1
XLOC_005077
hsa-miR-106b-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
666-679
0.011
1
8mer
2313-2327
0.008
0
6mer
5330-5344
0.003
4
7mer
3009-3020
0.003
2
6mer
4911-4931
0.002
1
6mer
5729-5751
0.002
2
6mer
3064-3078
0.001
1
6mer
5253-5269
0.001
0
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