LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
CTA-212A2.3
hsa-miR-106b-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8298-8320
0.007
1
8mer
13519-13539
0.004
0
8mer
2772-2797
0.004
0
8mer
6827-6847
0.004
1
6mer
748-759
0.003
0
8mer
7168-7188
0.003
0
8mer
3385-3402
0.003
0
6mer
8864-8869
0.002
1
6mer
9939-9953
0.002
0
6mer
12673-12690
0.001
Not Conserved
XLOC_003130
hsa-miR-106b-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007175
Biotype: transcript isomorph
Gene id: XLOC_003130
Gene Name: XLOC_003130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-26
0.034
0
RP11-33B1.3
hsa-miR-106b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506942
Biotype: lincRNA
Gene id: ENSG00000250950
Gene Name: RP11-33B1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
441-465
0.017
0
6mer
232-248
0.016
0
RP11-5N11.3
hsa-miR-106b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504817
Biotype: sense_intronic
Gene id: ENSG00000249114
Gene Name: RP11-5N11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-201
0.033
6
RP11-513O17.3
hsa-miR-106b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522622
Biotype: lincRNA
Gene id: ENSG00000253614
Gene Name: RP11-513O17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2540-2557
0.020
0
7mer
2023-2032
0.005
0
6mer
466-492
0.005
1
6mer
748-772
0.003
0
XLOC_009474
hsa-miR-106b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2539-2558
0.011
1
7mer
4885-4911
0.009
5
6mer
498-520
0.004
0
7mer
4497-4516
0.003
0
6mer
3937-3957
0.002
3
6mer
3171-3191
0.002
0
6mer
6157-6176
0.002
4
6mer
3914-3940
0.001
6
RP11-545I5.3
hsa-miR-106b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038246.1
Biotype: antisense
Gene id: NR_038246.1 (gene)
Gene Name: RP11-545I5.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1295-1313
0.017
1
7mer
2976-2997
0.007
1
6mer
2871-2893
0.004
1
6mer
595-614
0.003
2
6mer
990-1005
0.002
0
XLOC_005514
hsa-miR-106b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012001
Biotype: transcript isomorph
Gene id: XLOC_005514
Gene Name: XLOC_005514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2380-2394
0.011
1
8mer
1417-1434
0.010
1
6mer
2080-2084
0.005
Not Conserved
6mer
873-889
0.004
2
6mer
1174-1199
0.002
0
7mer
1192-1213
0.001
1
LAMTOR5-AS1
hsa-miR-106b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608067
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
611-625
0.023
1
7mer
529-551
0.011
1
XLOC_001199
hsa-miR-106b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1139-1161
0.015
1
8mer
2472-2491
0.009
1
7mer
4827-4850
0.005
1
6mer
1204-1214
0.002
1
7mer
2441-2453
0.002
2
XLOC_006722
hsa-miR-106b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014625
Biotype: transcript isomorph
Gene id: XLOC_006722
Gene Name: XLOC_006722
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-449
0.033
Not Conserved
SPAG5-AS1
hsa-miR-106b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000556050
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-750
0.019
0
8mer
788-805
0.015
0
XLOC_004924
hsa-miR-106b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1516-1533
0.005
1
8mer
8118-8138
0.005
1
8mer
5763-5783
0.004
1
6mer
293-314
0.004
1
8mer
2405-2426
0.003
1
8mer
6281-6297
0.003
0
6mer
4131-4146
0.002
1
6mer
4749-4776
0.002
3
6mer
7621-7639
0.002
0
6mer
3151-3173
0.002
0
6mer
3136-3155
0.001
2
MALAT1
hsa-miR-106b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-520
0.010
1
7mer
888-904
0.006
Not Conserved
6mer
454-470
0.004
0
7mer
5507-5522
0.004
2
6mer
6008-6035
0.003
6
6mer
7121-7133
0.003
5
6mer
7721-7734
0.002
2
6mer
6252-6268
0.002
2
XLOC_006901
hsa-miR-106b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014831
Biotype: transcript isomorph
Gene id: XLOC_006901
Gene Name: XLOC_006901
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-141
0.025
1
6mer
69-93
0.008
1
RP1-79C4.4
hsa-miR-106b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606154
Biotype: lincRNA
Gene id: ENSG00000271811
Gene Name: RP1-79C4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-27
0.026
1
6mer
1682-1697
0.004
1
6mer
663-686
0.003
0
PRKG1-AS1
hsa-miR-106b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420193
Biotype: antisense
Gene id: ENSG00000236671
Gene Name: PRKG1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
754-768
0.021
1
6mer
879-898
0.009
5
6mer
791-804
0.003
0
XLOC_013995
hsa-miR-106b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-179
0.019
0
7mer
577-596
0.009
0
6mer
665-670
0.004
0
6mer
2204-2224
0.001
Not Conserved
CTC-428G20.3
hsa-miR-106b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507241
Biotype: lincRNA
Gene id: ENSG00000248175
Gene Name: CTC-428G20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1960-1983
0.020
1
6mer
2021-2042
0.006
2
6mer
850-870
0.004
1
6mer
1736-1753
0.003
1
CTBP1-AS2
hsa-miR-106b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2327-2347
0.023
0
6mer
177-191
0.010
1
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