LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
SATB1-AS1
hsa-miR-106b-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438418
Biotype: retained_intron
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-112
0.034
1
SATB1-AS1
hsa-miR-106b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610002
Biotype: retained_intron
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-112
0.034
1
BIRC6-AS1
hsa-miR-106b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455572
Biotype: antisense
Gene id: ENSG00000230046
Gene Name: BIRC6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5-32
0.015
12
7mer
89-108
0.015
2
6mer
154-172
0.005
1
XLOC_006843
hsa-miR-106b-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014758
Biotype: transcript isomorph
Gene id: XLOC_006843
Gene Name: XLOC_006843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-383
0.034
2
RP11-1072C15.4
hsa-miR-106b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591628
Biotype: antisense
Gene id: ENSG00000267160
Gene Name: RP11-1072C15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2015-2038
0.009
7
6mer
443-463
0.007
6
6mer
615-631
0.006
7
6mer
105-117
0.005
4
6mer
1135-1145
0.004
9
6mer
956-974
0.002
0
6mer
1247-1274
0.002
1
ZNF561-AS1
hsa-miR-106b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587536
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-118
0.034
1
RP3-523K23.2
hsa-miR-106b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562834
Biotype: sense_overlapping
Gene id: ENSG00000261116
Gene Name: RP3-523K23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-289
0.022
2
6mer
1625-1649
0.005
1
6mer
634-647
0.005
4
6mer
1128-1153
0.003
1
LOC101929154
hsa-miR-106b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105013.1
Biotype: lincRNA
Gene id: NR_105013.1 (gene)
Gene Name: LOC101929154
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-187
0.034
0
XLOC_014244
hsa-miR-106b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029809
Biotype: transcript isomorph
Gene id: XLOC_014244
Gene Name: XLOC_014244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1004-1021
0.034
1
RP11-274B21.9
hsa-miR-106b-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605007
Biotype: lincRNA
Gene id: ENSG00000271344
Gene Name: RP11-274B21.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1244-1266
0.028
1
6mer
106-125
0.006
1
RP4-809F18.2
hsa-miR-106b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539588
Biotype: lincRNA
Gene id: ENSG00000257061
Gene Name: RP4-809F18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
643-663
0.034
0
RP11-1000B6.7
hsa-miR-106b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
141-156
0.019
0
6mer
317-342
0.015
0
XLOC_000695
hsa-miR-106b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-316
0.019
1
8mer
2876-2895
0.008
1
6mer
2928-2943
0.004
Not Conserved
7mer
2004-2024
0.003
0
CTA-390C10.10
hsa-miR-106b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609475
Biotype: sense_intronic
Gene id: ENSG00000272977
Gene Name: CTA-390C10.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1121-1135
0.016
1
7mer
540-552
0.011
1
6mer
445-467
0.002
Not Conserved
XLOC_010463
hsa-miR-106b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-666
0.006
2
7mer
10980-10999
0.005
1
8mer
6753-6776
0.003
1
6mer
4573-4577
0.003
5
6mer
993-1013
0.003
1
6mer
10828-10844
0.002
0
6mer
2134-2158
0.002
1
6mer
9999-10014
0.002
1
6mer
1759-1773
0.002
0
6mer
2489-2502
0.002
1
6mer
3760-3777
0.002
1
6mer
2610-2633
0.001
1
6mer
10073-10089
0.001
0
XLOC_010306
hsa-miR-106b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021725
Biotype: transcript isomorph
Gene id: XLOC_010306
Gene Name: XLOC_010306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1146-1164
0.031
2
6mer
283-303
0.003
Not Conserved
LOC100507577
hsa-miR-106b-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040677.1
Biotype: sense
Gene id: NR_040677.1 (gene)
Gene Name: LOC100507577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2145-2161
0.031
1
6mer
2026-2036
0.003
0
RP11-294J22.6
hsa-miR-106b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574246
Biotype: antisense
Gene id: ENSG00000262967
Gene Name: RP11-294J22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-211
0.020
1
8mer
424-441
0.009
1
6mer
284-309
0.005
1
AC096772.6
hsa-miR-106b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1057-1076
0.024
0
6mer
267-288
0.006
1
6mer
1012-1036
0.004
0
RP4-545C24.1
hsa-miR-106b-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000460955
Biotype: antisense
Gene id: ENSG00000244198
Gene Name: RP4-545C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-556
0.034
1
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