LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004093
hsa-miR-106b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007853
Biotype: transcript isomorph
Gene id: XLOC_004093
Gene Name: XLOC_004093
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-271
0.022
2
7mer
266-288
0.015
1
RP11-473M20.16
hsa-miR-106b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570843
Biotype: lincRNA
Gene id: ENSG00000261889
Gene Name: RP11-473M20.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-191
0.028
1
6mer
454-474
0.009
1
LINC00500
hsa-miR-106b-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515860
Biotype: lincRNA
Gene id: ENSG00000249381
Gene Name: LINC00500
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-173
0.037
0
AL133493.2
hsa-miR-106b-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6544-6562
0.019
0
6mer
46-65
0.007
2
9mer
5955-5975
0.007
Not Conserved
6mer
880-892
0.002
0
6mer
3403-3416
0.002
1
RP11-1148L6.5
hsa-miR-106b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000453810
Biotype: antisense
Gene id: ENSG00000228343
Gene Name: RP11-1148L6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
198-210
0.032
0
6mer
161-172
0.004
1
CTA-929C8.9
hsa-miR-106b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16199-16218
0.009
1
7mer
14542-14561
0.004
0
8mer
1628-1645
0.004
1
7mer
16773-16788
0.002
0
6mer
6348-6365
0.002
1
6mer
10643-10669
0.002
0
6mer
13330-13344
0.002
0
6mer
5639-5660
0.002
1
6mer
13850-13875
0.002
0
6mer
14390-14415
0.002
1
6mer
22510-22531
0.002
0
6mer
2400-2419
0.002
1
6mer
17144-17160
0.001
0
6mer
9611-9625
0.001
0
XLOC_001591
hsa-miR-106b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003793
Biotype: transcript isomorph
Gene id: XLOC_001591
Gene Name: XLOC_001591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-113
0.032
1
6mer
387-410
0.004
0
ZFPM2-AS1
hsa-miR-106b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520433
Biotype: antisense
Gene id: ENSG00000251003
Gene Name: ZFPM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
327-346
0.031
1
6mer
569-591
0.006
1
UCKL1-AS1
hsa-miR-106b-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_027287.1
Biotype: antisense
Gene id: NR_027287.1 (gene)
Gene Name: UCKL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-75
0.025
1
6mer
3446-3465
0.012
9
MGC27345
hsa-miR-106b-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9379-9393
0.017
1
8mer
7899-7916
0.007
0
7mer
7697-7710
0.005
3
6mer
8830-8849
0.003
3
6mer
2529-2542
0.002
1
6mer
5508-5533
0.002
1
6mer
3695-3718
0.001
1
XLOC_007141
hsa-miR-106b-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
838-854
0.037
0
MEG3
hsa-miR-106b-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000523671
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-529
0.033
4
6mer
1813-1826
0.003
1
XLOC_012630
hsa-miR-106b-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1382
0.011
0
6mer
1959-1968
0.010
0
6mer
500-513
0.008
0
6mer
810-829
0.006
0
6mer
1002-1010
0.002
Not Conserved
AC124861.1
hsa-miR-106b-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457178
Biotype: lincRNA
Gene id: ENSG00000227479
Gene Name: AC124861.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-420
0.037
2
RP11-417L19.2
hsa-miR-106b-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542763
Biotype: lincRNA
Gene id: ENSG00000256955
Gene Name: RP11-417L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-584
0.037
1
RP11-74E22.8
hsa-miR-106b-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000614400
Biotype: lincRNA
Gene id: ENSG00000277200
Gene Name: RP11-74E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3043-3066
0.028
7
8mer
2651-2668
0.006
0
6mer
1317-1335
0.003
5
CTC-273B12.5
hsa-miR-106b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596497
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-48
0.036
Not Conserved
AP000479.1
hsa-miR-106b-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532274
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1420-1437
0.033
1
6mer
1730-1746
0.004
0
XLOC_011484
hsa-miR-106b-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1208-1225
0.025
0
6mer
2748-2770
0.011
0
XLOC_001564
hsa-miR-106b-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003762
Biotype: transcript isomorph
Gene id: XLOC_001564
Gene Name: XLOC_001564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-928
0.036
0
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