LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
CTD-2015H6.3
hsa-miR-106b-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508000
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
469-488
0.080
2
8mer
837-857
0.013
1
6mer
92-112
0.008
1
6mer
339-363
0.005
1
RP11-374M1.2
hsa-miR-106b-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000399894
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-147
0.066
1
8mer
421-441
0.039
0
CTD-2313F11.1
hsa-miR-106b-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000615566
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-722
0.077
2
8mer
521-535
0.028
1
RP11-410C4.5
hsa-miR-106b-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563417
Biotype: lincRNA
Gene id: ENSG00000260505
Gene Name: RP11-410C4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2392-2409
0.085
1
7mer
1941-1954
0.008
1
6mer
2690-2694
0.006
1
6mer
826-852
0.005
1
RP11-555K2.4
hsa-miR-106b-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624226
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-46
0.058
1
7mer
19-38
0.045
1
CTA-221G9.11
hsa-miR-106b-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-865
0.072
0
6mer
1030-1052
0.016
0
6mer
154-171
0.014
0
LOC102467081
hsa-miR-106b-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104662.1
Biotype: sense
Gene id: NR_104662.1 (gene)
Gene Name: LOC102467081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-522
0.070
2
8mer
321-335
0.032
1
RP4-646N3.1
hsa-miR-106b-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000432359
Biotype: lincRNA
Gene id: ENSG00000235806
Gene Name: RP4-646N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
128-153
0.101
6
XLOC_004823
hsa-miR-106b-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010335
Biotype: transcript isomorph
Gene id: XLOC_004823
Gene Name: XLOC_004823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-781
0.074
2
8mer
580-594
0.027
1
RP11-544D21.2
hsa-miR-106b-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561926
Biotype: lincRNA
Gene id: ENSG00000259776
Gene Name: RP11-544D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2417-2436
0.075
2
8mer
956-973
0.016
1
8mer
2030-2047
0.005
0
6mer
2343-2360
0.003
3
6mer
2362-2378
0.002
0
RP11-281O15.8
hsa-miR-106b-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606195
Biotype: lincRNA
Gene id: ENSG00000272431
Gene Name: RP11-281O15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
241-259
0.089
4
7mer
254-278
0.011
2
RP11-111F5.3
hsa-miR-106b-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448491
Biotype: lincRNA
Gene id: ENSG00000231212
Gene Name: RP11-111F5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-463
0.056
1
7mer
458-474
0.042
1
RP11-399O19.9
hsa-miR-106b-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562983
Biotype: sense_overlapping
Gene id: ENSG00000261438
Gene Name: RP11-399O19.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1175-1198
0.089
1
6mer
1019-1045
0.005
0
6mer
645-660
0.004
1
RP11-263K4.3
hsa-miR-106b-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-550
0.053
1
9mer
710-730
0.021
0
7mer
2469-2489
0.014
1
7mer
2769-2787
0.006
0
6mer
2874-2897
0.005
3
XLOC_011038
hsa-miR-106b-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022755
Biotype: transcript isomorph
Gene id: XLOC_011038
Gene Name: XLOC_011038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-283
0.097
10
MIR8072
hsa-miR-106b-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602918
Biotype: lincRNA
Gene id: ENSG00000256092
Gene Name: MIR8072
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1659-1675
0.097
5
RP11-614F17.2
hsa-miR-106b-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507933
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-47
0.053
1
7mer
23-39
0.043
1
RP11-168K11.3
hsa-miR-106b-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2593-2616
0.092
3
6mer
1837-1855
0.004
6
TTN-AS1
hsa-miR-106b-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-861
0.046
7
8mer
494-501
0.045
6
6mer
776-797
0.005
2
XLOC_001668
hsa-miR-106b-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5162-5179
0.049
1
8mer
5639-5656
0.020
0
6mer
845-858
0.009
1
6mer
2389-2407
0.007
1
6mer
4276-4298
0.005
1
6mer
4334-4354
0.003
1
6mer
2647-2660
0.002
Not Conserved
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