LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
RP11-144G6.12
hsa-miR-106b-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000431840
Biotype: processed_transcript
Gene id: ENSG00000254929
Gene Name: RP11-144G6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-896
0.031
2
LINC00293
hsa-miR-106b-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
804-829
0.022
1
7mer
533-554
0.019
0
RP11-733C7.1
hsa-miR-106b-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507220
Biotype: lincRNA
Gene id: ENSG00000249091
Gene Name: RP11-733C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-271
0.024
2
7mer
266-288
0.016
1
RP4-620F22.2
hsa-miR-106b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437128
Biotype: antisense
Gene id: ENSG00000237568
Gene Name: RP4-620F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
110-124
0.041
0
TPTEP1
hsa-miR-106b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5657-5670
0.032
1
6mer
336-357
0.004
1
6mer
1177-1195
0.002
0
6mer
2073-2092
0.002
0
XLOC_013571
hsa-miR-106b-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027955
Biotype: transcript isomorph
Gene id: XLOC_013571
Gene Name: XLOC_013571
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-198
0.041
1
CTC-265F19.1
hsa-miR-106b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587894
Biotype: sense_intronic
Gene id: ENSG00000267749
Gene Name: CTC-265F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-105
0.021
0
8mer
917-934
0.020
0
XLOC_012051
hsa-miR-106b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024776
Biotype: transcript isomorph
Gene id: XLOC_012051
Gene Name: XLOC_012051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
356-379
0.041
0
CTA-243E7.1
hsa-miR-106b-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-320
0.013
1
8mer
855-872
0.009
1
8mer
12200-12217
0.006
1
8mer
5780-5800
0.005
1
8mer
8321-8338
0.003
0
6mer
6244-6265
0.002
1
6mer
11071-11092
0.002
0
7mer
4007-4027
0.002
0
RP11-358H9.1
hsa-miR-106b-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455363
Biotype: lincRNA
Gene id: ENSG00000226643
Gene Name: RP11-358H9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
208-225
0.040
2
RP11-583F2.2
hsa-miR-106b-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583416
Biotype: lincRNA
Gene id: ENSG00000265912
Gene Name: RP11-583F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2267-2287
0.018
0
7mer
1766-1776
0.014
1
6mer
1998-2017
0.008
1
XLOC_001216
hsa-miR-106b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000741
Biotype: transcript isomorph
Gene id: XLOC_001216
Gene Name: XLOC_001216
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
206-223
0.040
2
AC005220.3
hsa-miR-106b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450473
Biotype: antisense
Gene id: ENSG00000236352
Gene Name: AC005220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-198
0.040
1
LINC00643
hsa-miR-106b-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000334389
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2007-2025
0.013
5
6mer
231-247
0.010
11
6mer
456-469
0.007
7
6mer
142-167
0.005
5
6mer
2525-2548
0.003
0
6mer
2641-2658
0.003
1
LINC01301
hsa-miR-106b-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506428
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2115-2135
0.014
2
8mer
239-259
0.011
0
7mer
1376-1403
0.008
2
6mer
735-761
0.003
2
6mer
1551-1562
0.003
1
AC005083.1
hsa-miR-106b-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439446
Biotype: retained_intron
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
636-655
0.040
0
XLOC_010462
hsa-miR-106b-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022208
Biotype: transcript isomorph
Gene id: XLOC_010462
Gene Name: XLOC_010462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-183
0.040
3
RP11-171I2.1
hsa-miR-106b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-321
0.029
3
6mer
2043-2057
0.004
10
6mer
3227-3244
0.004
1
6mer
1189-1207
0.002
1
DNMBP-AS1
hsa-miR-106b-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434409
Biotype: antisense
Gene id: ENSG00000227695
Gene Name: DNMBP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2010-2023
0.029
1
8mer
1226-1246
0.006
1
8mer
1524-1544
0.005
0
XLOC_013753
hsa-miR-106b-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027891
Biotype: transcript isomorph
Gene id: XLOC_013753
Gene Name: XLOC_013753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
988-1002
0.025
1
8mer
492-514
0.008
1
6mer
39-53
0.007
1
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