LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005136
hsa-miR-106b-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012402
Biotype: transcript isomorph
Gene id: XLOC_005136
Gene Name: XLOC_005136
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-372
0.043
2
RP5-963E22.5
hsa-miR-106b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000567259
Biotype: lincRNA
Gene id: ENSG00000260416
Gene Name: RP5-963E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-90
0.023
1
7mer
84-108
0.014
1
8mer
1489-1507
0.005
Not Conserved
RP11-7K24.3
hsa-miR-106b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562471
Biotype: lincRNA
Gene id: ENSG00000261068
Gene Name: RP11-7K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1659-1677
0.015
0
7mer
1608-1617
0.010
1
8mer
1373-1393
0.009
1
6mer
54-73
0.004
0
7mer
1095-1111
0.004
Not Conserved
6mer
1054-1073
0.002
0
XLOC_012551
hsa-miR-106b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025730
Biotype: transcript isomorph
Gene id: XLOC_012551
Gene Name: XLOC_012551
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-247
0.039
3
6mer
39-60
0.004
0
HNF1A-AS1
hsa-miR-106b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535301
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-335
0.043
5
NOP14-AS1
hsa-miR-106b-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503709
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
407-425
0.043
0
AC004448.5
hsa-miR-106b-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610229
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-115
0.043
1
GRM7-AS3
hsa-miR-106b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445675
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
597-611
0.031
7
6mer
135-145
0.007
2
6mer
415-442
0.005
1
XLOC_003427
hsa-miR-106b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007460
Biotype: transcript isomorph
Gene id: XLOC_003427
Gene Name: XLOC_003427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
768-788
0.023
0
8mer
319-341
0.020
1
RP11-87E22.2
hsa-miR-106b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000511897
Biotype: antisense
Gene id: ENSG00000248738
Gene Name: RP11-87E22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3643-3660
0.029
0
8mer
2464-2489
0.014
2
TEX41
hsa-miR-106b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596034
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-718
0.043
5
XLOC_012784
hsa-miR-106b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
261-273
0.014
0
6mer
470-491
0.011
0
6mer
892-909
0.007
0
6mer
1226-1248
0.007
0
6mer
2099-2113
0.003
Not Conserved
KIZ-AS1
hsa-miR-106b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-491
0.024
1
7mer
5143-5169
0.007
2
8mer
4597-4617
0.005
0
6mer
3872-3882
0.002
4
6mer
3365-3379
0.002
2
TEX41
hsa-miR-106b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602108
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
868-894
0.042
5
GS1-358P8.4
hsa-miR-106b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1925-1941
0.032
6
6mer
311-329
0.004
1
7mer
3590-3614
0.003
1
6mer
4151-4166
0.003
0
LINC01197
hsa-miR-106b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555332
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
912-927
0.037
3
6mer
419-440
0.005
5
RGS5
hsa-miR-106b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528019
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-437
0.042
1
RP11-346C20.4
hsa-miR-106b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000606272
Biotype: lincRNA
Gene id: ENSG00000272250
Gene Name: RP11-346C20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-445
0.042
0
RP13-216E22.5
hsa-miR-106b-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603360
Biotype: sense_overlapping
Gene id: ENSG00000271199
Gene Name: RP13-216E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-249
0.042
0
RP11-384G23.1
hsa-miR-106b-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000615176
Biotype: lincRNA
Gene id: ENSG00000273919
Gene Name: RP11-384G23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1628-1645
0.025
1
6mer
1584-1597
0.006
3
6mer
1778-1794
0.005
1
6mer
576-593
0.003
1
6mer
374-395
0.003
1
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