LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
RP11-106M7.1
hsa-miR-106b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436932
Biotype: lincRNA
Gene id: ENSG00000228484
Gene Name: RP11-106M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1674-1695
0.024
1
7mer
217-239
0.011
0
8mer
576-596
0.009
0
FAM223A
hsa-miR-106b-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000598177
Biotype: lincRNA
Gene id: ENSG00000272681
Gene Name: FAM223A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-71
0.045
1
RP11-99H8.1
hsa-miR-106b-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423187
Biotype: lincRNA
Gene id: ENSG00000226208
Gene Name: RP11-99H8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-86
0.031
1
8mer
311-330
0.013
1
XLOC_007035
hsa-miR-106b-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-702
0.011
Not Conserved
8mer
3870-3882
0.007
1
8mer
10199-10219
0.005
0
7mer
6332-6355
0.004
Not Conserved
8mer
11003-11023
0.004
0
8mer
9366-9383
0.003
0
8mer
6956-6976
0.003
0
6mer
6063-6089
0.003
2
6mer
9665-9680
0.002
0
6mer
14052-14067
0.001
0
6mer
8077-8088
0.001
Not Conserved
XLOC_002612
hsa-miR-106b-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005982
Biotype: transcript isomorph
Gene id: XLOC_002612
Gene Name: XLOC_002612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1185-1211
0.026
0
7mer
162-185
0.015
0
6mer
1458-1483
0.003
1
RP11-178C3.2
hsa-miR-106b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586209
Biotype: lincRNA
Gene id: ENSG00000267302
Gene Name: RP11-178C3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-292
0.041
5
6mer
718-738
0.004
3
XLOC_003808
hsa-miR-106b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007688
Biotype: transcript isomorph
Gene id: XLOC_003808
Gene Name: XLOC_003808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8978-8992
0.020
2
7mer
6446-6462
0.005
1
8mer
4679-4696
0.004
1
6mer
6754-6778
0.003
4
6mer
1069-1090
0.003
3
8mer
1440-1460
0.003
0
8mer
1955-1972
0.003
0
6mer
3306-3333
0.002
2
6mer
6134-6149
0.002
1
RP11-1L9.1
hsa-miR-106b-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420403
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-310
0.044
1
CTD-2135D7.2
hsa-miR-106b-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575137
Biotype: antisense
Gene id: ENSG00000262732
Gene Name: CTD-2135D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-308
0.017
1
7mer
260-265
0.011
3
8mer
1671-1686
0.006
0
6mer
709-723
0.002
1
6mer
2557-2565
0.002
2
6mer
1781-1792
0.002
0
6mer
3550-3574
0.002
6
6mer
1706-1724
0.001
1
CTD-2515H24.2
hsa-miR-106b-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621477
Biotype: lincRNA
Gene id: ENSG00000276772
Gene Name: CTD-2515H24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-237
0.040
2
6mer
96-110
0.004
1
RP11-380B4.3
hsa-miR-106b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1000-1017
0.010
2
6mer
515-519
0.007
2
6mer
5262-5288
0.006
0
7mer
4497-4507
0.005
0
7mer
3912-3933
0.004
0
6mer
4402-4422
0.003
1
6mer
1133-1160
0.003
3
6mer
2321-2344
0.002
0
6mer
2746-2766
0.002
1
6mer
1008-1023
0.002
1
6mer
3082-3107
0.001
0
RP11-173A16.2
hsa-miR-106b-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588561
Biotype: sense_intronic
Gene id: ENSG00000266900
Gene Name: RP11-173A16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1408-1424
0.039
1
6mer
832-847
0.005
1
LL22NC03-22D1.1
hsa-miR-106b-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
104-123
0.007
3
7mer
4579-4599
0.006
0
7mer
18525-18538
0.005
1
8mer
3878-3898
0.003
1
6mer
13369-13385
0.003
5
7mer
2483-2498
0.003
0
6mer
18734-18754
0.003
2
6mer
17229-17250
0.002
0
6mer
7767-7779
0.002
1
6mer
12020-12035
0.002
1
6mer
23962-23970
0.002
0
6mer
17702-17723
0.001
0
6mer
8459-8473
0.001
Not Conserved
6mer
11470-11488
0.001
0
6mer
19722-19745
0.001
0
6mer
27146-27162
0.001
Not Conserved
RP11-516C1.1
hsa-miR-106b-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558047
Biotype: antisense
Gene id: ENSG00000259595
Gene Name: RP11-516C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
432-454
0.038
4
7mer
253-267
0.006
0
RP11-374M1.2
hsa-miR-106b-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-174
0.044
0
RP11-242C19.2
hsa-miR-106b-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000497961
Biotype: sense_intronic
Gene id: ENSG00000241886
Gene Name: RP11-242C19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-476
0.032
0
7mer
106-130
0.012
1
RP11-2A4.4
hsa-miR-106b-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3487-3505
0.032
1
6mer
596-611
0.007
4
6mer
3266-3283
0.002
1
6mer
1210-1225
0.002
0
6mer
1304-1327
0.001
1
XLOC_007690
hsa-miR-106b-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-127
0.036
1
6mer
757-775
0.007
1
XLOC_008455
hsa-miR-106b-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018163
Biotype: transcript isomorph
Gene id: XLOC_008455
Gene Name: XLOC_008455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
536-560
0.037
1
6mer
696-716
0.006
0
RP11-342H21.2
hsa-miR-106b-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456389
Biotype: antisense
Gene id: ENSG00000231080
Gene Name: RP11-342H21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
830-850
0.024
1
7mer
76-93
0.014
1
6mer
598-610
0.005
1
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