LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001148
hsa-miR-106b-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000111
Biotype: transcript isomorph
Gene id: XLOC_001148
Gene Name: XLOC_001148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2196-2210
0.032
3
6mer
2207-2225
0.008
5
6mer
145-164
0.005
1
6mer
950-968
0.002
2
NAMA
hsa-miR-106b-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102271.1
Biotype: lincRNA
Gene id: NR_102271.1 (gene)
Gene Name: NAMA
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1217
0.047
8
FAM182A
hsa-miR-106b-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000376398
Biotype: lincRNA
Gene id: ENSG00000125804
Gene Name: FAM182A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-63
0.043
1
6mer
4688-4709
0.003
0
6mer
1880-1899
0.001
Not Conserved
RP11-526A4.1
hsa-miR-106b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511993
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-54
0.021
1
7mer
1790-1816
0.011
1
8mer
1242-1254
0.010
0
6mer
1875-1896
0.005
1
XLOC_010670
hsa-miR-106b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022065
Biotype: transcript isomorph
Gene id: XLOC_010670
Gene Name: XLOC_010670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1861-1884
0.047
1
AGAP11
hsa-miR-106b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-181
0.032
1
7mer
1245-1267
0.005
0
7mer
3449-3470
0.004
Not Conserved
6mer
998-1009
0.003
1
6mer
1668-1685
0.003
1
6mer
1969-1982
0.001
Not Conserved
XLOC_001963
hsa-miR-106b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-555
0.021
3
7mer
323-341
0.014
1
7mer
888-914
0.008
1
6mer
663-672
0.003
2
XLOC_006934
hsa-miR-106b-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
578-601
0.024
1
7mer
3805-3828
0.006
0
7mer
2462-2488
0.006
1
6mer
1692-1707
0.002
2
6mer
3454-3467
0.002
1
6mer
3319-3336
0.002
1
6mer
1408-1421
0.002
1
6mer
2275-2296
0.002
0
RP11-18J9.3
hsa-miR-106b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547033
Biotype: lincRNA
Gene id: ENSG00000258178
Gene Name: RP11-18J9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1194-1209
0.035
1
6mer
199-221
0.006
1
6mer
853-868
0.004
1
6mer
404-426
0.003
0
AP000487.4
hsa-miR-106b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000324630
Biotype: antisense
Gene id: ENSG00000254495
Gene Name: AP000487.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-31
0.042
1
6mer
200-217
0.005
1
FAM223A
hsa-miR-106b-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000593346
Biotype: lincRNA
Gene id: ENSG00000272681
Gene Name: FAM223A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-66
0.047
1
XLOC_001343
hsa-miR-106b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002818
Biotype: transcript isomorph
Gene id: XLOC_001343
Gene Name: XLOC_001343
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-30
0.028
1
8mer
633-653
0.013
1
6mer
37-54
0.005
0
XLOC_003641
hsa-miR-106b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008193
Biotype: transcript isomorph
Gene id: XLOC_003641
Gene Name: XLOC_003641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1625-1650
0.021
3
7mer
1130-1156
0.013
4
7mer
4096-4111
0.008
0
6mer
3992-4008
0.003
0
6mer
2654-2664
0.002
1
6mer
3998-4016
0.001
0
RGS5
hsa-miR-106b-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528818
Biotype: retained_intron
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-462
0.041
1
6mer
260-284
0.006
1
XLOC_005160
hsa-miR-106b-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011687
Biotype: transcript isomorph
Gene id: XLOC_005160
Gene Name: XLOC_005160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-76
0.034
1
6mer
5488-5510
0.006
1
6mer
5398-5413
0.004
Not Conserved
6mer
3468-3486
0.002
Not Conserved
AC138430.4
hsa-miR-106b-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586064
Biotype: retained_intron
Gene id: ENSG00000267629
Gene Name: AC138430.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-164
0.037
1
7mer
855-871
0.010
3
AC005592.3
hsa-miR-106b-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000566527
Biotype: lincRNA
Gene id: ENSG00000261757
Gene Name: AC005592.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
538-554
0.017
1
7mer
455-477
0.011
0
6mer
746-768
0.007
2
6mer
109-126
0.006
Not Conserved
6mer
314-335
0.005
1
RP11-421L21.3
hsa-miR-106b-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449473
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
594-608
0.043
3
6mer
664-688
0.003
1
AC087430.1
hsa-miR-106b-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-204
0.025
1
8mer
3437-3454
0.009
1
6mer
3158-3177
0.004
1
6mer
2966-2993
0.003
1
6mer
2509-2521
0.003
1
6mer
1386-1406
0.002
0
HOXA-AS2
hsa-miR-106b-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593438
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
468-482
0.038
1
7mer
464-475
0.008
0
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