LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
PROX1-AS1
hsa-miR-106b-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-637
0.028
1
8mer
1948-1967
0.012
1
7mer
4303-4326
0.005
1
6mer
680-690
0.004
1
7mer
1917-1929
0.002
2
AC012506.3
hsa-miR-106b-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426527
Biotype: lincRNA
Gene id: ENSG00000223634
Gene Name: AC012506.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-420
0.050
2
XLOC_006976
hsa-miR-106b-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1565-1582
0.017
1
8mer
2149-2166
0.012
0
6mer
1748-1765
0.008
1
6mer
10-26
0.007
0
6mer
1732-1755
0.004
1
6mer
1654-1674
0.001
Not Conserved
LL22NC03-86G7.1
hsa-miR-106b-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32503-32527
0.008
1
7mer
36081-36101
0.006
1
8mer
37490-37506
0.006
0
7mer
29284-29302
0.004
1
8mer
29881-29900
0.003
1
7mer
36458-36482
0.003
1
8mer
24953-24971
0.003
1
7mer
10561-10583
0.003
1
6mer
474-499
0.002
0
6mer
32902-32918
0.002
4
6mer
15812-15838
0.001
1
6mer
8573-8594
0.001
Not Conserved
6mer
4359-4379
0.001
0
6mer
7620-7645
0.001
Not Conserved
6mer
22118-22139
0.001
1
6mer
12170-12188
0.001
1
6mer
35151-35171
0.001
1
6mer
3827-3845
0.001
Not Conserved
GABPB1-AS1
hsa-miR-106b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14703-14723
0.007
1
6mer
16135-16154
0.006
2
9mer
4977-4994
0.006
0
8mer
12599-12616
0.004
1
8mer
13803-13823
0.003
1
6mer
15501-15518
0.003
1
8mer
13501-13518
0.003
0
8mer
2016-2033
0.003
0
6mer
5516-5533
0.002
3
6mer
11112-11123
0.002
1
6mer
4010-4024
0.002
1
6mer
2460-2474
0.002
Not Conserved
6mer
9547-9560
0.002
2
8mer
11196-11213
0.002
0
6mer
8143-8165
0.002
Not Conserved
6mer
12016-12033
0.001
1
ZNRD1-AS1
hsa-miR-106b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
976-1003
0.011
0
7mer
6739-6764
0.011
1
7mer
5312-5332
0.007
1
6mer
9134-9154
0.007
1
6mer
720-742
0.005
1
6mer
3997-4009
0.003
0
6mer
7329-7353
0.003
1
6mer
5075-5096
0.002
0
NAMA
hsa-miR-106b-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604258
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1686-1699
0.049
8
RP5-1014D13.2
hsa-miR-106b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6192-6213
0.014
1
7mer
5030-5045
0.004
0
8mer
10159-10179
0.003
0
8mer
7504-7524
0.003
0
8mer
11200-11220
0.003
0
8mer
5900-5917
0.003
0
8mer
6593-6613
0.003
0
8mer
7173-7192
0.003
0
8mer
3091-3111
0.002
0
6mer
4517-4527
0.002
1
6mer
8188-8206
0.002
1
6mer
13284-13311
0.002
0
6mer
9512-9532
0.001
0
6mer
6890-6907
0.001
Not Conserved
6mer
4663-4681
0.001
1
6mer
9784-9801
0.001
0
6mer
6267-6284
0.001
0
6mer
4535-4548
0.001
1
TTTY15
hsa-miR-106b-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-718
0.049
0
RP11-206L10.9
hsa-miR-106b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591440
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
720-740
0.048
1
AC068039.4
hsa-miR-106b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2005-2022
0.048
0
RP11-702F3.1
hsa-miR-106b-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528480
Biotype: lincRNA
Gene id: ENSG00000254653
Gene Name: RP11-702F3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-298
0.026
1
6mer
542-558
0.011
6
8mer
120-144
0.011
1
MIR181A1HG
hsa-miR-106b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432296
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
865-879
0.040
3
6mer
876-894
0.009
5
XLOC_009248
hsa-miR-106b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019969
Biotype: transcript isomorph
Gene id: XLOC_009248
Gene Name: XLOC_009248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
365-379
0.048
1
PWAR6
hsa-miR-106b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4230-4251
0.031
2
6mer
4576-4595
0.007
0
6mer
777-800
0.005
2
6mer
1758-1780
0.003
1
6mer
3159-3186
0.002
1
6mer
1836-1857
0.001
1
RP11-60H5.1
hsa-miR-106b-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567718
Biotype: lincRNA
Gene id: ENSG00000260840
Gene Name: RP11-60H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-44
0.018
1
7mer
3028-3046
0.008
1
7mer
615-634
0.007
0
6mer
2903-2928
0.006
3
6mer
446-466
0.006
2
6mer
1505-1530
0.002
1
6mer
1368-1394
0.002
1
TPTEP1
hsa-miR-106b-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000585784
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-293
0.037
0
6mer
127-148
0.011
1
MIR181A1HG
hsa-miR-106b-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436880
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2224-2238
0.032
3
6mer
2235-2253
0.008
5
6mer
173-192
0.006
1
6mer
978-996
0.002
2
RP11-643A5.2
hsa-miR-106b-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558920
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-27
0.040
2
6mer
41-59
0.007
1
AC008268.1
hsa-miR-106b-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425887
Biotype: lincRNA
Gene id: ENSG00000235584
Gene Name: AC008268.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1051-1073
0.031
2
7mer
634-655
0.011
1
6mer
961-975
0.006
2
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