LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004054
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009112
Biotype: transcript isomorph
Gene id: XLOC_004054
Gene Name: XLOC_004054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
281-304
0.012
4
6mer
266-287
0.007
2
6mer
507-528
0.006
0
RP11-869B15.1
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000598393
Biotype: lincRNA
Gene id: ENSG00000269290
Gene Name: RP11-869B15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-274
0.019
0
6mer
416-434
0.006
0
XLOC_011806
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024487
Biotype: transcript isomorph
Gene id: XLOC_011806
Gene Name: XLOC_011806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
236-247
0.025
1
LINC01279
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610103
Biotype: lincRNA
Gene id: ENSG00000272761
Gene Name: LINC01279
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
657-673
0.010
1
8mer
4234-4252
0.006
0
8mer
3972-3995
0.005
1
6mer
3059-3077
0.002
0
6mer
3577-3591
0.002
2
N4BP2L2-IT2
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_026928.1
Biotype: sense
Gene id: NR_026928.1 (gene)
Gene Name: N4BP2L2-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4322-4331
0.006
1
6mer
4412-4424
0.005
1
7mer
3362-3388
0.004
3
7mer
4069-4086
0.004
0
6mer
3049-3067
0.003
3
6mer
2269-2283
0.002
0
6mer
3583-3605
0.002
0
LAMTOR5-AS1
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608635
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-637
0.021
1
6mer
291-312
0.004
1
XLOC_012598
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1433-1460
0.011
0
8mer
1038-1048
0.009
Not Conserved
6mer
1280-1302
0.003
Not Conserved
6mer
1040-1067
0.001
Not Conserved
XLOC_005493
hsa-miR-106a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011982
Biotype: transcript isomorph
Gene id: XLOC_005493
Gene Name: XLOC_005493
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-341
0.025
0
CTD-2340E1.2
hsa-miR-106a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501405
Biotype: lincRNA
Gene id: ENSG00000247402
Gene Name: CTD-2340E1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-143
0.025
1
AC073325.1
hsa-miR-106a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443714
Biotype: lincRNA
Gene id: ENSG00000225537
Gene Name: AC073325.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-277
0.025
1
RP11-397A16.3
hsa-miR-106a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2465-2484
0.025
1
XLOC_010254
hsa-miR-106a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020989
Biotype: transcript isomorph
Gene id: XLOC_010254
Gene Name: XLOC_010254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-238
0.010
0
8mer+mismatch
586-606
0.006
0
6mer
2627-2649
0.005
1
6mer
1355-1376
0.003
1
6mer
1228-1247
0.001
Not Conserved
RP11-710F7.3
hsa-miR-106a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513220
Biotype: antisense
Gene id: ENSG00000249635
Gene Name: RP11-710F7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2316-2334
0.010
1
6mer
95-114
0.006
0
6mer
3125-3143
0.003
1
6mer
3012-3037
0.003
1
6mer
1256-1272
0.002
1
AC105339.1
hsa-miR-106a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440089
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-193
0.014
4
6mer
472-493
0.011
6
RP11-338O1.2
hsa-miR-106a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415509
Biotype: lincRNA
Gene id: ENSG00000225152
Gene Name: RP11-338O1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-69
0.025
1
RP11-13N13.6
hsa-miR-106a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578583
Biotype: antisense
Gene id: ENSG00000265656
Gene Name: RP11-13N13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-196
0.025
1
KB-1592A4.14
hsa-miR-106a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417463
Biotype: lincRNA
Gene id: ENSG00000234503
Gene Name: KB-1592A4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
122-143
0.025
1
CH17-437K3.1
hsa-miR-106a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417218
Biotype: lincRNA
Gene id: ENSG00000227082
Gene Name: CH17-437K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2425-2441
0.017
1
6mer
78-90
0.003
Not Conserved
6mer
105-128
0.003
Not Conserved
6mer
1337-1361
0.002
0
CTD-2349P21.5
hsa-miR-106a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579639
Biotype: lincRNA
Gene id: ENSG00000263603
Gene Name: CTD-2349P21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-255
0.025
1
CTD-2192J16.26
hsa-miR-106a-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593554
Biotype: lincRNA
Gene id: ENSG00000268945
Gene Name: CTD-2192J16.26
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-283
0.025
1
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