LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008781
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017954
Biotype: transcript isomorph
Gene id: XLOC_008781
Gene Name: XLOC_008781
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-869
0.012
0
7mer
172-197
0.007
0
6mer
313-339
0.005
0
XLOC_008762
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017732
Biotype: transcript isomorph
Gene id: XLOC_008762
Gene Name: XLOC_008762
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
312-334
0.014
7
7mer
3108-3134
0.006
0
6mer
126-142
0.005
1
RP11-344E13.3
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577537
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2750-2767
0.009
Not Conserved
6mer
3511-3522
0.005
Not Conserved
6mer
3124-3146
0.003
Not Conserved
6mer
2425-2442
0.002
Not Conserved
7mer
1549-1568
0.002
Not Conserved
6mer
1996-2009
0.002
0
6mer
1443-1461
0.002
Not Conserved
6mer
2061-2077
0.001
0
LINC00645
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3350-3367
0.005
1
7mer
2378-2398
0.005
1
6mer
744-768
0.004
3
6mer
1336-1348
0.003
1
6mer
633-647
0.002
1
6mer
2015-2039
0.002
1
7mer
2103-2121
0.002
3
6mer
2047-2071
0.001
3
SNHG16
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000493536
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
606-631
0.025
1
LAMTOR5-AS1
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598454
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-658
0.021
1
6mer
562-583
0.004
1
LINC00967
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517689
Biotype: lincRNA
Gene id: ENSG00000253138
Gene Name: LINC00967
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
519-528
0.018
0
7mer
18-34
0.005
0
6mer
155-180
0.002
1
RP11-96C23.5
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
678-703
0.023
1
6mer
1046-1062
0.002
0
XLOC_004268
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009854
Biotype: transcript isomorph
Gene id: XLOC_004268
Gene Name: XLOC_004268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-288
0.025
1
MEG3
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
979-1004
0.022
4
7mer
2284-2302
0.003
1
LINC00664
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3406-3422
0.013
1
6mer
3457-3478
0.012
1
RP11-344G13.1
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503929
Biotype: lincRNA
Gene id: ENSG00000248872
Gene Name: RP11-344G13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-156
0.008
Not Conserved
7mer
1660-1678
0.007
0
6mer
3478-3492
0.005
0
6mer
813-840
0.002
Not Conserved
6mer
1447-1470
0.002
0
XLOC_012043
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024759
Biotype: transcript isomorph
Gene id: XLOC_012043
Gene Name: XLOC_012043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1609-1627
0.025
1
XLOC_007401
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016011
Biotype: transcript isomorph
Gene id: XLOC_007401
Gene Name: XLOC_007401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1108-1128
0.010
1
6mer
267-285
0.003
1
6mer
2120-2144
0.003
1
6mer
1381-1402
0.003
1
6mer
1897-1912
0.003
1
6mer
973-994
0.002
1
RP11-428J1.4
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606227
Biotype: lincRNA
Gene id: ENSG00000271978
Gene Name: RP11-428J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2521-2539
0.025
0
XLOC_008100
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017281
Biotype: transcript isomorph
Gene id: XLOC_008100
Gene Name: XLOC_008100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
161-184
0.018
2
7mer
471-493
0.007
0
LINC-PINT
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451786
Biotype: antisense
Gene id: ENSG00000231721
Gene Name: LINC-PINT
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-310
0.015
4
6mer
2777-2797
0.004
1
6mer
793-815
0.003
1
6mer
1698-1710
0.002
1
6mer
1433-1455
0.001
1
LAMTOR5-AS1
hsa-miR-106a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608719
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-600
0.021
1
6mer
352-373
0.004
1
HAGLR
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000547207
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-356
0.013
4
7mer
549-571
0.011
1
LAMTOR5-AS1
hsa-miR-106a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000616223
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-189
0.020
1
6mer
93-114
0.005
1
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