LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005488
hsa-miR-106a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011978
Biotype: transcript isomorph
Gene id: XLOC_005488
Gene Name: XLOC_005488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-38
0.025
1
FLJ37453
hsa-miR-106a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000317122
Biotype: antisense
Gene id: ENSG00000179743
Gene Name: FLJ37453
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2391-2414
0.013
1
8mer
2262-2285
0.008
1
6mer
854-876
0.002
2
6mer
1043-1065
0.001
0
RP4-758J24.5
hsa-miR-106a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606641
Biotype: lincRNA
Gene id: ENSG00000272091
Gene Name: RP4-758J24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1101-1119
0.011
1
6mer
1596-1616
0.007
1
6mer
310-327
0.004
1
6mer
748-767
0.003
0
RP11-614F17.2
hsa-miR-106a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507332
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-273
0.013
1
7mer
317-329
0.012
1
XLOC_011484
hsa-miR-106a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1209-1232
0.025
0
KTN1-AS1
hsa-miR-106a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412224
Biotype: antisense
Gene id: ENSG00000186615
Gene Name: KTN1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-101
0.010
0
7mer
697-720
0.007
0
7mer
613-632
0.006
0
6mer
1046-1062
0.002
1
RP11-404P21.5
hsa-miR-106a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555383
Biotype: sense_intronic
Gene id: ENSG00000258412
Gene Name: RP11-404P21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-436
0.025
1
XLOC_010306
hsa-miR-106a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021725
Biotype: transcript isomorph
Gene id: XLOC_010306
Gene Name: XLOC_010306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1139-1163
0.014
2
7mer
283-304
0.006
Not Conserved
6mer
1075-1088
0.005
0
XLOC_006409
hsa-miR-106a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013776
Biotype: transcript isomorph
Gene id: XLOC_006409
Gene Name: XLOC_006409
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-50
0.017
1
6mer
370-389
0.008
7
RP11-83A24.2
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610159
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-260
0.012
1
8mer
679-702
0.006
1
8mer
2718-2741
0.003
0
6mer
3930-3953
0.002
1
6mer
3278-3294
0.002
1
AL035610.1
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000426534
Biotype: lincRNA
Gene id: ENSG00000232079
Gene Name: AL035610.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1616-1634
0.007
2
6mer
1629-1653
0.006
0
6mer
1647-1673
0.005
0
6mer
215-230
0.004
0
6mer
1195-1213
0.003
1
XLOC_000697
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001385
Biotype: transcript isomorph
Gene id: XLOC_000697
Gene Name: XLOC_000697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1589-1604
0.017
0
8mer
1542-1561
0.008
0
XLOC_007348
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016575
Biotype: transcript isomorph
Gene id: XLOC_007348
Gene Name: XLOC_007348
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-472
0.024
3
6mer
498-521
0.001
0
RP11-159D12.2
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585065
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3273-3297
0.015
0
7mer
2970-2988
0.004
1
6mer
2338-2354
0.002
0
6mer
1503-1514
0.002
3
6mer
1428-1451
0.001
1
6mer
2254-2264
0.001
1
RP11-231E4.2
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562582
Biotype: lincRNA
Gene id: ENSG00000259779
Gene Name: RP11-231E4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-444
0.025
0
XLOC_005143
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011660
Biotype: transcript isomorph
Gene id: XLOC_005143
Gene Name: XLOC_005143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1637
0.014
0
6mer
1180-1185
0.006
0
6mer
1701-1720
0.005
0
FAR2P2
hsa-miR-106a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046260.1
Biotype: lincRNA
Gene id: NR_046260.1 (gene)
Gene Name: FAR2P2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2416-2434
0.014
0
8mer
2556-2579
0.011
0
MGC45800
hsa-miR-106a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000315302
Biotype: antisense
Gene id: ENSG00000177822
Gene Name: MGC45800
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
365-383
0.013
1
6mer
315-334
0.005
2
7mer
1525-1542
0.005
0
6mer
965-985
0.002
1
LAMTOR5-AS1
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608499
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
766-786
0.021
1
6mer
690-711
0.004
1
LINC00608
hsa-miR-106a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015390.1
Biotype: lincRNA
Gene id: NR_015390.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
851-869
0.025
0
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