LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-854K16.3
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568414
Biotype: lincRNA
Gene id: ENSG00000260986
Gene Name: RP11-854K16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-72
0.026
0
LOC102659288
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110015.1
Biotype: lincRNA
Gene id: NR_110015.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1052-1073
0.026
0
XLOC_009414
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019614
Biotype: transcript isomorph
Gene id: XLOC_009414
Gene Name: XLOC_009414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-49
0.014
4
8mer
1456-1478
0.008
0
6mer
96-117
0.004
1
LMCD1-AS1
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420095
Biotype: antisense
Gene id: ENSG00000227110
Gene Name: LMCD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
945-965
0.016
1
8mer
636-659
0.006
1
6mer
1900-1916
0.003
1
RP1-136B1.1
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606542
Biotype: lincRNA
Gene id: ENSG00000272465
Gene Name: RP1-136B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-35
0.019
8
6mer
441-459
0.007
3
RP11-344N10.5
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608005
Biotype: lincRNA
Gene id: ENSG00000272630
Gene Name: RP11-344N10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
366-384
0.007
2
6mer
1075-1098
0.006
4
6mer
2715-2731
0.005
Not Conserved
7mer
1535-1562
0.004
0
6mer
1844-1871
0.003
0
XLOC_009690
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020359
Biotype: transcript isomorph
Gene id: XLOC_009690
Gene Name: XLOC_009690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-600
0.016
1
6mer
74-97
0.006
1
6mer
401-422
0.004
1
XXbac-B461K10.4
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000476405
Biotype: retained_intron
Gene id: ENSG00000093100
Gene Name: XXbac-B461K10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
540-562
0.026
0
LOC102659288
hsa-miR-106a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1120-1141
0.026
0
XLOC_001635
hsa-miR-106a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003823
Biotype: transcript isomorph
Gene id: XLOC_001635
Gene Name: XLOC_001635
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2108-2129
0.011
0
7mer
352-374
0.005
1
7mer
1833-1855
0.004
1
6mer
1147-1171
0.002
1
6mer
774-800
0.002
0
XLOC_004323
hsa-miR-106a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009910
Biotype: transcript isomorph
Gene id: XLOC_004323
Gene Name: XLOC_004323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4646-4661
0.008
0
7mer
5160-5176
0.007
1
6mer
568-592
0.003
0
7mer
1648-1670
0.003
0
6mer
725-745
0.002
0
6mer
2210-2228
0.002
2
6mer
1169-1179
0.002
0
XLOC_002616
hsa-miR-106a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005990
Biotype: transcript isomorph
Gene id: XLOC_002616
Gene Name: XLOC_002616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7-33
0.026
1
LOC283045
hsa-miR-106a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_104162.1
Biotype: antisense
Gene id: NR_104162.1 (gene)
Gene Name: LOC283045
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
965-983
0.010
0
7mer
1503-1514
0.007
0
7mer
1703-1727
0.006
1
6mer
2068-2095
0.003
0
XLOC_006263
hsa-miR-106a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014220
Biotype: transcript isomorph
Gene id: XLOC_006263
Gene Name: XLOC_006263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-699
0.026
0
RP11-478K15.6
hsa-miR-106a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421190
Biotype: lincRNA
Gene id: ENSG00000230731
Gene Name: RP11-478K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2355-2369
0.010
1
6mer
701-718
0.005
3
6mer
3244-3265
0.005
1
6mer
2804-2829
0.003
1
6mer
1235-1251
0.002
1
TSG1
hsa-miR-106a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_015362.1
Biotype: lincRNA
Gene id: NR_015362.1 (gene)
Gene Name: TSG1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4098-4124
0.016
0
6mer
291-299
0.004
0
6mer
2236-2262
0.002
1
6mer
2430-2454
0.002
1
6mer
1580-1606
0.001
0
RP11-861E21.2
hsa-miR-106a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589795
Biotype: antisense
Gene id: ENSG00000267199
Gene Name: RP11-861E21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1224-1245
0.009
0
7mer
4762-4780
0.008
3
6mer
4215-4241
0.002
0
6mer
1662-1686
0.002
0
6mer
3298-3324
0.002
1
6mer
1799-1817
0.001
0
6mer
3419-3445
0.001
0
RP11-379I19.1
hsa-miR-106a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521456
Biotype: lincRNA
Gene id: ENSG00000253260
Gene Name: RP11-379I19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-228
0.015
0
6mer
56-75
0.010
1
XLOC_007735
hsa-miR-106a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016355
Biotype: transcript isomorph
Gene id: XLOC_007735
Gene Name: XLOC_007735
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-100
0.018
0
6mer
5-16
0.007
0
RP11-674P19.2
hsa-miR-106a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
727-753
0.011
2
6mer
265-289
0.007
2
6mer
1839-1860
0.005
1
6mer
1115-1128
0.003
0
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