LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
LOC388692
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4825-4836
0.004
0
8mer
4480-4503
0.004
0
6mer
12152-12170
0.004
0
8mer
5800-5823
0.003
0
6mer
9862-9875
0.003
1
7mer
2250-2270
0.003
1
8mer
3902-3920
0.002
Not Conserved
6mer
2167-2179
0.002
1
6mer
7988-8003
0.001
0
LINC01360
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440762
Biotype: lincRNA
Gene id: ENSG00000233973
Gene Name: LINC01360
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1251-1273
0.009
0
7mer
3415-3438
0.009
1
8mer
1806-1829
0.005
1
6mer
2629-2646
0.003
0
HAGLR
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000552156
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-43
0.015
4
7mer
236-258
0.011
1
RP1-200K18.1
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456715
Biotype: lincRNA
Gene id: ENSG00000224893
Gene Name: RP1-200K18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-153
0.016
0
6mer
55-77
0.006
1
6mer
242-268
0.004
0
XLOC_003782
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008327
Biotype: transcript isomorph
Gene id: XLOC_003782
Gene Name: XLOC_003782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4185-4208
0.010
1
8mer
3694-3709
0.009
3
6mer
930-950
0.003
1
6mer
2695-2711
0.002
1
6mer
989-1013
0.001
2
6mer
2707-2726
0.001
2
PRICKLE2-AS1
hsa-miR-106a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476308
Biotype: antisense
Gene id: ENSG00000241572
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-536
0.026
2
CTA-544A11.1
hsa-miR-106a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-221
0.006
2
8mer
7952-7971
0.005
1
6mer
3448-3468
0.003
1
8mer
4623-4644
0.003
0
6mer
6328-6348
0.002
0
6mer
1276-1296
0.002
0
6mer
6904-6930
0.002
1
6mer
2814-2838
0.002
1
6mer
5515-5538
0.002
0
MIAT
hsa-miR-106a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000452429
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-851
0.022
0
6mer
722-738
0.004
1
RP13-20L14.1
hsa-miR-106a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566971
Biotype: lincRNA
Gene id: ENSG00000260011
Gene Name: RP13-20L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-269
0.021
0
6mer
191-214
0.005
0
XLOC_012051
hsa-miR-106a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024776
Biotype: transcript isomorph
Gene id: XLOC_012051
Gene Name: XLOC_012051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-381
0.026
0
XLOC_010651
hsa-miR-106a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3101-3119
0.020
Not Conserved
6mer
715-730
0.004
1
6mer
1940-1961
0.002
1
AQP4-AS1
hsa-miR-106a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568797
Biotype: antisense
Gene id: ENSG00000260372
Gene Name: AQP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1781-1808
0.012
9
9mer
444-468
0.007
0
7mer
1433-1446
0.007
3
LINC00550
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3104-3122
0.020
Not Conserved
6mer
718-733
0.004
1
6mer
1943-1964
0.002
1
RP1-20B11.2
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430842
Biotype: antisense
Gene id: ENSG00000230433
Gene Name: RP1-20B11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-432
0.026
0
CTD-2537I9.13
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592252
Biotype: sense_intronic
Gene id: ENSG00000267096
Gene Name: CTD-2537I9.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-616
0.026
1
XLOC_001066
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001706
Biotype: transcript isomorph
Gene id: XLOC_001066
Gene Name: XLOC_001066
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
430-448
0.021
0
6mer
392-407
0.004
0
SC22CB-109E1.1
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2074-2095
0.008
1
6mer
488-506
0.006
1
6mer
538-562
0.004
1
6mer
9706-9729
0.002
0
6mer
3986-4009
0.002
0
6mer
5989-6003
0.001
1
6mer
2141-2162
0.001
1
6mer
2561-2586
0.001
0
LAMTOR5-AS1
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608067
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
605-625
0.021
1
6mer
529-550
0.004
1
XLOC_010943
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022641
Biotype: transcript isomorph
Gene id: XLOC_010943
Gene Name: XLOC_010943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-392
0.026
1
XLOC_009633
hsa-miR-106a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020288
Biotype: transcript isomorph
Gene id: XLOC_009633
Gene Name: XLOC_009633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-105
0.015
1
8mer
609-632
0.010
1
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