LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010870
hsa-miR-106a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023015
Biotype: transcript isomorph
Gene id: XLOC_010870
Gene Name: XLOC_010870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
961-984
0.015
1
8mer
483-506
0.008
0
6mer
310-327
0.004
1
XLOC_002585
hsa-miR-106a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6000-6017
0.010
2
8mer
718-737
0.006
1
6mer
5724-5744
0.005
3
6mer
4288-4308
0.003
1
6mer
2203-2227
0.003
3
RP11-60L3.1
hsa-miR-106a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561332
Biotype: antisense
Gene id: ENSG00000259264
Gene Name: RP11-60L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
795-818
0.026
1
RP11-305L7.7
hsa-miR-106a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608358
Biotype: lincRNA
Gene id: ENSG00000273381
Gene Name: RP11-305L7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3842-3860
0.008
1
7mer
2094-2117
0.006
2
6mer
424-440
0.005
1
6mer
550-569
0.003
1
6mer
1914-1937
0.002
2
6mer
2055-2072
0.001
7
6mer
2061-2072
0.001
5
RP11-362F19.1
hsa-miR-106a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509161
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
994-1008
0.008
1
6mer
1088-1098
0.006
4
6mer
177-192
0.005
1
6mer
2166-2189
0.004
1
6mer
812-833
0.003
0
XLOC_004206
hsa-miR-106a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008693
Biotype: transcript isomorph
Gene id: XLOC_004206
Gene Name: XLOC_004206
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
59-86
0.018
10
6mer
811-835
0.008
4
AF146191.4
hsa-miR-106a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508156
Biotype: lincRNA
Gene id: ENSG00000245685
Gene Name: AF146191.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-61
0.026
7
RP11-267C16.1
hsa-miR-106a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578152
Biotype: lincRNA
Gene id: ENSG00000227115
Gene Name: RP11-267C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-646
0.013
1
8mer
1692-1709
0.009
1
6mer
2505-2525
0.002
Not Conserved
6mer
1373-1387
0.001
1
RP11-266L9.5
hsa-miR-106a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571219
Biotype: lincRNA
Gene id: ENSG00000262155
Gene Name: RP11-266L9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1661-1678
0.015
3
7mer
1122-1138
0.006
2
7mer
867-886
0.004
0
LINC01343
hsa-miR-106a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431311
Biotype: lincRNA
Gene id: ENSG00000237290
Gene Name: LINC01343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1896-1922
0.022
1
7mer
927-942
0.004
1
XLOC_014197
hsa-miR-106a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029335
Biotype: transcript isomorph
Gene id: XLOC_014197
Gene Name: XLOC_014197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
985-1010
0.020
4
6mer
66-77
0.006
1
RP4-717I23.3
hsa-miR-106a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411670
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-56
0.026
3
LOC100130872
hsa-miR-106a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_024569.1
Biotype: sense
Gene id: NR_024569.1 (gene)
Gene Name: LOC100130872
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3078-3104
0.012
1
7mer
1828-1847
0.004
0
6mer
1841-1865
0.003
2
7mer
1582-1603
0.003
1
6mer
2249-2261
0.002
0
6mer
1525-1543
0.002
2
XLOC_003433
hsa-miR-106a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007381
Biotype: transcript isomorph
Gene id: XLOC_003433
Gene Name: XLOC_003433
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1106-1127
0.012
1
6mer
2242-2264
0.006
1
6mer
486-513
0.003
Not Conserved
6mer
637-656
0.002
1
6mer
583-607
0.002
1
RP11-495P10.5
hsa-miR-106a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427169
Biotype: lincRNA
Gene id: ENSG00000238107
Gene Name: RP11-495P10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1886-1910
0.014
1
6mer
1742-1759
0.009
1
6mer
872-890
0.004
0
ASAP1-IT2
hsa-miR-106a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_045385.1
Biotype: sense
Gene id: NR_045385.1 (gene)
Gene Name: ASAP1-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1317-1340
0.011
0
8mer
82-105
0.009
0
7mer
1563-1568
0.006
1
XLOC_000918
hsa-miR-106a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000020
Biotype: transcript isomorph
Gene id: XLOC_000918
Gene Name: XLOC_000918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
41-52
0.010
3
8mer
2032-2051
0.007
3
6mer
1015-1035
0.003
1
6mer
1402-1422
0.002
0
6mer
1321-1342
0.001
Not Conserved
6mer
3021-3047
0.001
0
RP11-672L10.1
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
41-61
0.026
1
CTB-131K11.1
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582842
Biotype: antisense
Gene id: ENSG00000266469
Gene Name: CTB-131K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
284-300
0.015
9
6mer
261-287
0.011
8
LINC00837
hsa-miR-106a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038376.1
Biotype: lincRNA
Gene id: NR_038376.1 (gene)
Gene Name: LINC00837
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
313-335
0.014
7
7mer
3109-3135
0.007
0
6mer
127-143
0.005
1
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