LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005193
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011715
Biotype: transcript isomorph
Gene id: XLOC_005193
Gene Name: XLOC_005193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-361
0.018
1
6mer
450-469
0.009
4
LINC00971
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484892
Biotype: lincRNA
Gene id: ENSG00000242641
Gene Name: LINC00971
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1014
0.019
1
6mer
325-339
0.004
0
6mer
270-295
0.003
0
6mer
1525-1552
0.001
0
RP1-137K2.2
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442936
Biotype: antisense
Gene id: ENSG00000233044
Gene Name: RP1-137K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-45
0.022
1
6mer
34-58
0.005
0
AC004158.3
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-194
0.017
4
7mer
1081-1101
0.006
8
6mer
2227-2253
0.002
6
6mer
2637-2663
0.002
1
AC009502.4
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607654
Biotype: lincRNA
Gene id: ENSG00000227308
Gene Name: AC009502.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1342-1362
0.021
1
7mer
316-343
0.006
0
LINC-PINT
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024153.1
Biotype: lincRNA
Gene id: NR_024153.1 (gene)
Gene Name: LINC-PINT
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-317
0.016
4
6mer
1705-1717
0.005
1
6mer
800-822
0.003
1
6mer
1440-1462
0.002
1
RP11-639B1.1
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490465
Biotype: lincRNA
Gene id: ENSG00000241131
Gene Name: RP11-639B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-269
0.020
2
6mer
262-286
0.007
4
SNORA59B
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578183
Biotype: sense_intronic
Gene id: ENSG00000266079
Gene Name: SNORA59B
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-119
0.017
2
6mer
202-219
0.008
1
6mer
599-625
0.003
Not Conserved
RP11-163M18.1
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555433
Biotype: antisense
Gene id: ENSG00000258747
Gene Name: RP11-163M18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-73
0.027
1
RP11-346C20.3
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604855
Biotype: lincRNA
Gene id: ENSG00000271009
Gene Name: RP11-346C20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-219
0.021
0
6mer
612-634
0.006
5
XLOC_006485
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013855
Biotype: transcript isomorph
Gene id: XLOC_006485
Gene Name: XLOC_006485
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
71-85
0.005
0
6mer
217-242
0.005
0
6mer
200-223
0.005
0
6mer
420-446
0.004
Not Conserved
6mer
730-751
0.003
0
6mer
380-407
0.003
0
6mer
1097-1113
0.002
0
XLOC_010593
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021644
Biotype: transcript isomorph
Gene id: XLOC_010593
Gene Name: XLOC_010593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3-23
0.009
0
8mer
577-601
0.008
0
6mer
607-628
0.005
0
7mer
855-881
0.004
0
RP11-383J24.6
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
771-798
0.008
1
6mer
467-490
0.007
1
7mer
1035-1058
0.007
1
6mer
1179-1206
0.005
1
PAX8-AS1
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10884-10903
0.008
0
8mer
5254-5278
0.006
0
6mer
10809-10835
0.005
6
7mer
8198-8211
0.003
1
6mer
10002-10026
0.002
3
6mer
10654-10678
0.002
0
6mer
3008-3032
0.001
1
RP11-1072C15.4
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591628
Biotype: antisense
Gene id: ENSG00000267160
Gene Name: RP11-1072C15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2015-2036
0.009
7
7mer
1134-1160
0.008
7
6mer
9-20
0.006
3
6mer
957-979
0.004
6
AC073626.2
hsa-miR-106a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415146
Biotype: antisense
Gene id: ENSG00000224595
Gene Name: AC073626.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-534
0.027
8
CTD-3051D23.4
hsa-miR-106a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553344
Biotype: lincRNA
Gene id: ENSG00000258593
Gene Name: CTD-3051D23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-310
0.017
0
8mer
638-657
0.010
0
CTD-2144E22.8
hsa-miR-106a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568121
Biotype: lincRNA
Gene id: ENSG00000260854
Gene Name: CTD-2144E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-144
0.027
1
MIR7515HG
hsa-miR-106a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585872
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-248
0.016
0
6mer
8-17
0.006
2
6mer
274-292
0.005
0
RP11-258F22.1
hsa-miR-106a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432530
Biotype: lincRNA
Gene id: ENSG00000226578
Gene Name: RP11-258F22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-679
0.012
0
7mer
7-32
0.009
0
6mer
148-171
0.006
0
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