LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008046
hsa-miR-106a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016921
Biotype: transcript isomorph
Gene id: XLOC_008046
Gene Name: XLOC_008046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3954-3967
0.009
5
7mer
3234-3257
0.007
6
7mer
2823-2841
0.005
2
6mer
365-385
0.003
3
6mer
2497-2505
0.002
2
7mer
3206-3231
0.001
Not Conserved
LINC00890
hsa-miR-106a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569275
Biotype: lincRNA
Gene id: ENSG00000260802
Gene Name: LINC00890
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3954-3967
0.009
5
7mer
3234-3257
0.007
6
7mer
2823-2841
0.005
2
6mer
365-385
0.003
3
6mer
2497-2505
0.002
2
7mer
3206-3231
0.001
Not Conserved
RP11-284J1.1
hsa-miR-106a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606622
Biotype: lincRNA
Gene id: ENSG00000272485
Gene Name: RP11-284J1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2233-2252
0.011
1
6mer
2276-2302
0.006
1
6mer
1510-1521
0.005
7
7mer
543-557
0.005
1
AC006538.8
hsa-miR-106a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612495
Biotype: sense_intronic
Gene id: ENSG00000276097
Gene Name: AC006538.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-343
0.021
3
6mer
457-462
0.006
1
XLOC_012981
hsa-miR-106a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
906-923
0.012
0
7mer
2284-2303
0.011
0
6mer
736-750
0.004
0
C8orf49
hsa-miR-106a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000525043
Biotype: lincRNA
Gene id: ENSG00000255394
Gene Name: C8orf49
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-99
0.018
1
9mer
1614-1634
0.006
Not Conserved
6mer
779-797
0.003
0
RP11-504I13.3
hsa-miR-106a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583287
Biotype: antisense
Gene id: ENSG00000263982
Gene Name: RP11-504I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-189
0.027
1
XLOC_009546
hsa-miR-106a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019752
Biotype: transcript isomorph
Gene id: XLOC_009546
Gene Name: XLOC_009546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-218
0.027
1
RP11-323I15.5
hsa-miR-106a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559246
Biotype: lincRNA
Gene id: ENSG00000259336
Gene Name: RP11-323I15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-646
0.020
0
6mer
1038-1064
0.004
1
6mer
852-872
0.003
Not Conserved
XLOC_012593
hsa-miR-106a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025154
Biotype: transcript isomorph
Gene id: XLOC_012593
Gene Name: XLOC_012593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-266
0.022
0
6mer
188-211
0.006
0
XLOC_000529
hsa-miR-106a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001247
Biotype: transcript isomorph
Gene id: XLOC_000529
Gene Name: XLOC_000529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3983-4002
0.008
1
7mer
1018-1040
0.008
1
8mer
2805-2831
0.004
1
6mer
3787-3803
0.003
Not Conserved
6mer
3307-3330
0.003
1
6mer
2941-2967
0.001
Not Conserved
RP13-539F13.3
hsa-miR-106a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512833
Biotype: lincRNA
Gene id: ENSG00000250406
Gene Name: RP13-539F13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2550-2569
0.012
1
6mer
116-137
0.006
2
6mer
837-857
0.004
2
6mer
1630-1646
0.003
4
6mer
1259-1280
0.001
Not Conserved
XLOC_002368
hsa-miR-106a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005258
Biotype: transcript isomorph
Gene id: XLOC_002368
Gene Name: XLOC_002368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2194-2214
0.016
7
8mer
3654-3662
0.009
1
6mer
1695-1712
0.002
0
RP11-862G15.2
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555299
Biotype: lincRNA
Gene id: ENSG00000258499
Gene Name: RP11-862G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1287-1304
0.014
0
8mer
595-615
0.013
1
XLOC_006128
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-171
0.020
0
7mer
541-554
0.007
0
XLOC_006753
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6796-6823
0.015
10
7mer
4694-4711
0.008
5
6mer
6344-6370
0.005
7
EPB41L4A-AS1
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000427306
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
847-866
0.027
1
CTC-471J1.2
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000569091
Biotype: sense_overlapping
Gene id: ENSG00000260160
Gene Name: CTC-471J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-170
0.027
1
RP3-468B3.2
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-259
0.009
1
7mer
137-155
0.008
1
7mer
1467-1488
0.005
3
7mer
4071-4076
0.003
1
6mer
3573-3593
0.002
3
AC023481.1
hsa-miR-106a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000435368
Biotype: lincRNA
Gene id: ENSG00000231401
Gene Name: AC023481.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
232-255
0.016
1
7mer
94-118
0.007
0
6mer
484-493
0.004
2
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