LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
GJA9-MYCBP
hsa-miR-106a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037634.1
Biotype: sense
Gene id: NR_037634.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2634-2658
0.009
1
7mer
3444-3464
0.008
6
7mer
273-296
0.007
1
6mer
1668-1685
0.003
7
LINC01088
hsa-miR-106a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513153
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
637-664
0.028
11
HAGLR
hsa-miR-106a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447538
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-135
0.016
4
7mer
328-350
0.011
1
LINC00561
hsa-miR-106a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000565815
Biotype: lincRNA
Gene id: ENSG00000261206
Gene Name: LINC00561
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
72-89
0.009
2
6mer
24-32
0.008
1
6mer
1848-1869
0.004
1
6mer
375-397
0.002
0
6mer
1573-1595
0.002
1
6mer
1829-1852
0.002
1
RP3-329A5.8
hsa-miR-106a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605896
Biotype: lincRNA
Gene id: ENSG00000272374
Gene Name: RP3-329A5.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-440
0.025
2
6mer
1404-1428
0.003
4
CTD-2027I19.3
hsa-miR-106a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620377
Biotype: lincRNA
Gene id: ENSG00000276030
Gene Name: CTD-2027I19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-351
0.028
0
CEBPZ-AS1
hsa-miR-106a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037879.1
Biotype: sense
Gene id: NR_037879.1 (gene)
Gene Name: CEBPZ-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
725-746
0.008
0
8mer
970-993
0.005
1
6mer
2403-2417
0.003
0
7mer
2589-2615
0.003
2
6mer
2534-2555
0.003
1
6mer
2067-2094
0.003
2
6mer
1442-1461
0.002
Not Conserved
ITGA9-AS1
hsa-miR-106a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450990
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-48
0.023
1
6mer
137-158
0.005
1
RP11-333J10.3
hsa-miR-106a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620689
Biotype: sense_intronic
Gene id: ENSG00000277589
Gene Name: RP11-333J10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
651-674
0.028
0
HCG18
hsa-miR-106a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454269
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-113
0.020
1
7mer
1038-1062
0.005
1
6mer
1304-1308
0.002
0
RP11-121C2.2
hsa-miR-106a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000563286
Biotype: lincRNA
Gene id: ENSG00000259959
Gene Name: RP11-121C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1266-1287
0.018
2
6mer
1149-1171
0.003
3
6mer
1406-1421
0.002
1
6mer
1939-1958
0.002
1
6mer
2736-2760
0.002
1
RP11-571I18.5
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595906
Biotype: antisense
Gene id: ENSG00000269506
Gene Name: RP11-571I18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1243-1262
0.010
5
6mer
1343-1361
0.008
4
6mer
995-1009
0.006
3
6mer
1003-1023
0.003
3
RP11-173A16.2
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588561
Biotype: sense_intronic
Gene id: ENSG00000266900
Gene Name: RP11-173A16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1404-1423
0.023
1
6mer
828-846
0.005
1
LOC101928604
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110081.1
Biotype: antisense
Gene id: NR_110081.1 (gene)
Gene Name: LOC101928604
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
980-998
0.014
0
8mer
828-851
0.008
0
8mer
404-427
0.006
0
XLOC_002323
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004445
Biotype: transcript isomorph
Gene id: XLOC_002323
Gene Name: XLOC_002323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-381
0.017
1
6mer
51-66
0.011
1
RP5-991G20.1
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563328
Biotype: antisense
Gene id: ENSG00000259768
Gene Name: RP5-991G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1131-1154
0.011
7
8mer
1307-1326
0.011
6
6mer
464-484
0.006
8
HAGLR
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000546798
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-129
0.017
4
7mer
322-344
0.011
1
XLOC_005972
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013326
Biotype: transcript isomorph
Gene id: XLOC_005972
Gene Name: XLOC_005972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2641-2667
0.012
1
8mer
593-616
0.008
0
8mer
1529-1552
0.005
0
6mer
1850-1860
0.003
0
RP11-686D22.4
hsa-miR-106a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592117
Biotype: lincRNA
Gene id: ENSG00000267547
Gene Name: RP11-686D22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-520
0.027
1
RP4-717I23.3
hsa-miR-106a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451302
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-551
0.018
3
6mer
84-103
0.010
8
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