LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
GJA9-MYCBP
hsa-miR-106a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037633.1
Biotype: sense
Gene id: NR_037633.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2634-2658
0.009
1
7mer
273-296
0.008
1
7mer
4312-4332
0.008
6
6mer
1668-1685
0.003
7
AC018359.1
hsa-miR-106a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000415991
Biotype: lincRNA
Gene id: ENSG00000226320
Gene Name: AC018359.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-105
0.024
0
6mer
408-429
0.004
1
RP11-486L19.2
hsa-miR-106a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000536986
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-551
0.015
1
8mer
248-266
0.009
1
7mer
1451-1468
0.003
0
XLOC_010216
hsa-miR-106a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020949
Biotype: transcript isomorph
Gene id: XLOC_010216
Gene Name: XLOC_010216
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-520
0.028
1
RP11-626K17.3
hsa-miR-106a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565549
Biotype: lincRNA
Gene id: ENSG00000261541
Gene Name: RP11-626K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3532-3553
0.014
0
8mer
2210-2228
0.005
0
6mer
3852-3872
0.005
1
6mer
999-1018
0.003
1
6mer
1817-1841
0.001
0
RP11-415D17.3
hsa-miR-106a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415457
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-462
0.028
9
RP11-421F16.3
hsa-miR-106a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500632
Biotype: antisense
Gene id: ENSG00000247903
Gene Name: RP11-421F16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
175-201
0.007
1
6mer
16-37
0.006
2
6mer
2143-2159
0.005
1
6mer
2265-2286
0.005
1
6mer
672-692
0.004
1
RP3-402G11.25
hsa-miR-106a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607943
Biotype: antisense
Gene id: ENSG00000273188
Gene Name: RP3-402G11.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-324
0.022
1
6mer
129-148
0.006
0
RGS5
hsa-miR-106a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526176
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-69
0.028
1
XLOC_003677
hsa-miR-106a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008880
Biotype: transcript isomorph
Gene id: XLOC_003677
Gene Name: XLOC_003677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3277-3292
0.011
2
8mer
1057-1076
0.007
1
7mer
1876-1889
0.003
Not Conserved
6mer
3171-3192
0.003
Not Conserved
6mer
2701-2714
0.003
1
6mer
2596-2613
0.002
0
PWARSN
hsa-miR-106a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-176
0.016
2
8mer
1537-1555
0.009
0
7mer
1136-1155
0.003
0
CH17-262A2.1
hsa-miR-106a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000618815
Biotype: sense_intronic
Gene id: ENSG00000275426
Gene Name: CH17-262A2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-82
0.028
1
RP11-545A16.1
hsa-miR-106a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569644
Biotype: antisense
Gene id: ENSG00000261250
Gene Name: RP11-545A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-206
0.024
1
6mer
3005-3029
0.003
Not Conserved
CTD-2162K18.3
hsa-miR-106a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
451-467
0.011
1
7mer
1012-1033
0.009
1
8mer
1418-1441
0.008
0
XLOC_010474
hsa-miR-106a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021875
Biotype: transcript isomorph
Gene id: XLOC_010474
Gene Name: XLOC_010474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
426-445
0.028
1
CTD-2313F11.1
hsa-miR-106a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607910
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
441-460
0.028
1
LAMTOR5-AS1
hsa-miR-106a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444238
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-425
0.015
1
7mer
546-571
0.008
0
6mer
329-350
0.004
1
INTS6-AS1
hsa-miR-106a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_103812.1
Biotype: antisense
Gene id: NR_103812.1 (gene)
Gene Name: INTS6-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-542
0.024
3
6mer
506-531
0.003
1
KB-208E9.1
hsa-miR-106a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608615
Biotype: lincRNA
Gene id: ENSG00000272733
Gene Name: KB-208E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-775
0.028
0
XLOC_006364
hsa-miR-106a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013714
Biotype: transcript isomorph
Gene id: XLOC_006364
Gene Name: XLOC_006364
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-231
0.013
1
7mer
405-424
0.011
2
6mer
1349-1368
0.003
1
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