LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-106a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-392O17.2
hsa-miR-106a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612055
Biotype: lincRNA
Gene id: ENSG00000277007
Gene Name: RP11-392O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2546-2572
0.010
2
7mer
155-180
0.008
0
6mer
2377-2399
0.006
5
6mer
955-974
0.003
0
6mer
1731-1754
0.002
1
RP11-538D16.2
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411509
Biotype: lincRNA
Gene id: ENSG00000224810
Gene Name: RP11-538D16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1915-1935
0.028
3
AC090044.1
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110118.1
Biotype: lincRNA
Gene id: NR_110118.1 (gene)
Gene Name: AC090044.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1517-1539
0.005
1
6mer
434-450
0.005
1
6mer
3575-3596
0.005
2
7mer
1710-1728
0.004
3
6mer
3023-3039
0.004
2
6mer
1110-1124
0.003
0
6mer
2393-2418
0.003
1
RP11-510M2.2
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500612
Biotype: antisense
Gene id: ENSG00000247324
Gene Name: RP11-510M2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2533-2552
0.023
1
8mer
1748-1771
0.006
1
LINC00029
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414668
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-96
0.028
1
XLOC_008207
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3889-3910
0.006
1
6mer
596-622
0.006
3
6mer
948-963
0.004
4
6mer
4229-4245
0.004
0
6mer
1147-1173
0.003
5
6mer
2596-2606
0.002
1
6mer
1659-1685
0.001
1
6mer
1640-1655
0.001
1
XLOC_012579
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026166
Biotype: transcript isomorph
Gene id: XLOC_012579
Gene Name: XLOC_012579
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-77
0.009
1
6mer
347-365
0.006
1
8mer
987-1010
0.005
1
8mer
643-667
0.005
0
6mer
414-437
0.003
Not Conserved
RP3-405J10.3
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3453-3477
0.017
4
8mer
4392-4415
0.008
0
6mer
2701-2721
0.002
3
6mer
2501-2521
0.002
1
CTC-369A16.3
hsa-miR-106a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510853
Biotype: lincRNA
Gene id: ENSG00000251662
Gene Name: CTC-369A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-116
0.028
5
CASC16
hsa-miR-106a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000510238
Biotype: lincRNA
Gene id: ENSG00000249231
Gene Name: CASC16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
703-722
0.028
1
ZNF561-AS1
hsa-miR-106a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588765
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-131
0.028
1
RP11-159H22.2
hsa-miR-106a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525833
Biotype: antisense
Gene id: ENSG00000254862
Gene Name: RP11-159H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1101-1125
0.021
6
7mer
622-639
0.007
0
RP11-16C1.2
hsa-miR-106a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578539
Biotype: sense_intronic
Gene id: ENSG00000264853
Gene Name: RP11-16C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-94
0.009
0
6mer
298-324
0.008
3
6mer
265-287
0.005
2
6mer
2582-2600
0.004
1
6mer
1586-1611
0.003
3
ZNRD1-AS1
hsa-miR-106a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5311-5335
0.013
1
7mer
3996-4009
0.006
0
6mer
6740-6764
0.005
1
7mer
7328-7349
0.004
1
PCA3
hsa-miR-106a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412654
Biotype: antisense
Gene id: ENSG00000225937
Gene Name: PCA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3507-3528
0.007
3
6mer
3705-3724
0.007
1
7mer
212-234
0.006
0
7mer
1187-1214
0.003
2
6mer
2895-2917
0.003
1
6mer
1257-1271
0.002
0
XLOC_004229
hsa-miR-106a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008716
Biotype: transcript isomorph
Gene id: XLOC_004229
Gene Name: XLOC_004229
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-610
0.028
1
RP4-620F22.2
hsa-miR-106a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437128
Biotype: antisense
Gene id: ENSG00000237568
Gene Name: RP4-620F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-123
0.028
0
RP11-755B10.3
hsa-miR-106a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465933
Biotype: lincRNA
Gene id: ENSG00000241933
Gene Name: RP11-755B10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2664-2687
0.014
0
7mer
2878-2900
0.008
0
8mer
2364-2386
0.006
0
ACVR2B-AS1
hsa-miR-106a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2157-2177
0.014
0
9mer
1667-1686
0.010
0
6mer
975-996
0.002
Not Conserved
6mer
1314-1331
0.002
3
AC002480.2
hsa-miR-106a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414116
Biotype: lincRNA
Gene id: ENSG00000238033
Gene Name: AC002480.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
506-522
0.017
1
6mer
1969-1987
0.009
8
6mer
1493-1517
0.003
2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept