LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010064
hsa-miR-106a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020776
Biotype: transcript isomorph
Gene id: XLOC_010064
Gene Name: XLOC_010064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-86
0.029
1
RP11-805L22.3
hsa-miR-106a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577970
Biotype: lincRNA
Gene id: ENSG00000263567
Gene Name: RP11-805L22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-330
0.029
0
RP3-395M20.8
hsa-miR-106a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443892
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-127
0.029
1
LINC01266
hsa-miR-106a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420823
Biotype: lincRNA
Gene id: ENSG00000224957
Gene Name: LINC01266
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3672-3693
0.006
2
7mer
1614-1636
0.005
1
6mer
531-547
0.005
1
7mer
1807-1825
0.004
3
6mer
3120-3136
0.004
2
6mer
2490-2515
0.003
1
6mer
1207-1221
0.003
0
RP11-130L8.1
hsa-miR-106a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602445
Biotype: lincRNA
Gene id: ENSG00000270100
Gene Name: RP11-130L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
211-224
0.012
5
7mer
429-452
0.010
0
6mer
132-154
0.008
4
LAMTOR5-AS1
hsa-miR-106a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612551
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-536
0.025
1
6mer
440-461
0.004
1
STARD13-AS
hsa-miR-106a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608315
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.029
4
STARD13-AS
hsa-miR-106a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609615
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-81
0.029
4
KMT2E-AS1
hsa-miR-106a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024586.1
Biotype: lincRNA
Gene id: NR_024586.1 (gene)
Gene Name: KMT2E-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1113-1134
0.016
1
6mer
260-275
0.005
2
6mer
2313-2326
0.004
7
6mer
1740-1754
0.002
1
6mer
1090-1105
0.001
1
RP11-521O16.1
hsa-miR-106a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567613
Biotype: lincRNA
Gene id: ENSG00000260634
Gene Name: RP11-521O16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-142
0.017
1
6mer
395-416
0.007
1
6mer
357-376
0.006
1
STARD13-AS
hsa-miR-106a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608539
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.029
4
XLOC_006035
hsa-miR-106a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013404
Biotype: transcript isomorph
Gene id: XLOC_006035
Gene Name: XLOC_006035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1220-1236
0.015
1
7mer
995-1020
0.007
1
6mer
2434-2439
0.004
0
6mer
2117-2139
0.003
1
ZNF561-AS1
hsa-miR-106a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-129
0.029
1
XLOC_010715
hsa-miR-106a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022104
Biotype: transcript isomorph
Gene id: XLOC_010715
Gene Name: XLOC_010715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
747-770
0.029
0
RP11-806H10.4
hsa-miR-106a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592569
Biotype: lincRNA
Gene id: ENSG00000266970
Gene Name: RP11-806H10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-578
0.029
1
XLOC_004641
hsa-miR-106a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010179
Biotype: transcript isomorph
Gene id: XLOC_004641
Gene Name: XLOC_004641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-192
0.012
4
7mer
1135-1152
0.011
1
6mer
919-928
0.005
3
CTD-2207A17.1
hsa-miR-106a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-57
0.022
1
7mer
1812-1830
0.007
0
MIR7515HG
hsa-miR-106a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589024
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-309
0.018
0
6mer
69-78
0.006
2
6mer
685-703
0.005
0
AC079163.1
hsa-miR-106a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418416
Biotype: lincRNA
Gene id: ENSG00000226218
Gene Name: AC079163.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.023
0
6mer
271-289
0.005
0
XLOC_004536
hsa-miR-106a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010079
Biotype: transcript isomorph
Gene id: XLOC_004536
Gene Name: XLOC_004536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1773-1796
0.020
1
6mer
2118-2135
0.006
2
6mer
1866-1887
0.003
Not Conserved
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