LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_006813
hsa-miR-106a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014723
Biotype: transcript isomorph
Gene id: XLOC_006813
Gene Name: XLOC_006813
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-38
0.029
0
AC124861.1
hsa-miR-106a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457178
Biotype: lincRNA
Gene id: ENSG00000227479
Gene Name: AC124861.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
398-412
0.029
1
AC005220.3
hsa-miR-106a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450473
Biotype: antisense
Gene id: ENSG00000236352
Gene Name: AC005220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-197
0.029
1
XLOC_003641
hsa-miR-106a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008193
Biotype: transcript isomorph
Gene id: XLOC_003641
Gene Name: XLOC_003641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1628-1649
0.010
3
6mer
1130-1155
0.005
4
6mer
4065-4090
0.003
1
6mer
3568-3584
0.003
1
6mer
3989-4008
0.003
0
6mer
4095-4110
0.003
0
6mer
4115-4130
0.002
0
6mer
3997-4016
0.002
1
LINC01091
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514823
Biotype: lincRNA
Gene id: ENSG00000249464
Gene Name: LINC01091
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
744-767
0.009
0
6mer
528-546
0.005
0
7mer
1934-1956
0.005
0
6mer
950-972
0.004
0
6mer
1664-1683
0.003
1
6mer
958-982
0.002
0
6mer
3794-3819
0.002
1
RP11-415D17.3
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588761
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-534
0.029
9
RP11-463J10.2
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556834
Biotype: antisense
Gene id: ENSG00000258928
Gene Name: RP11-463J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-354
0.029
1
CTD-2313F11.1
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608929
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
281-300
0.029
1
STARD13-AS
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609995
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.029
4
XLOC_001212
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001829
Biotype: transcript isomorph
Gene id: XLOC_001212
Gene Name: XLOC_001212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-504
0.025
2
6mer
25-49
0.004
0
CTBP1-AS2
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514984
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-314
0.029
1
CTD-2620I22.3
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596769
Biotype: lincRNA
Gene id: ENSG00000267943
Gene Name: CTD-2620I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3781-3800
0.020
1
7mer
871-894
0.005
0
6mer
2912-2935
0.004
1
6mer
2966-2988
0.001
0
XLOC_008323
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017647
Biotype: transcript isomorph
Gene id: XLOC_008323
Gene Name: XLOC_008323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-265
0.029
0
RP1-168L15.5
hsa-miR-106a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000568025
Biotype: antisense
Gene id: ENSG00000261420
Gene Name: RP1-168L15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1091
0.014
1
8mer
333-353
0.008
1
8mer
749-772
0.004
Not Conserved
7mer
648-673
0.003
0
XLOC_006934
hsa-miR-106a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3808-3827
0.007
0
6mer
578-600
0.006
1
7mer
3443-3468
0.005
1
7mer
2279-2297
0.004
0
6mer
3121-3144
0.003
1
6mer
3312-3335
0.002
1
6mer
2462-2487
0.001
1
6mer
2383-2407
0.001
0
LOC100128288
hsa-miR-106a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_024447.1
Biotype: lincRNA
Gene id: NR_024447.1 (gene)
Gene Name: LOC100128288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1907-1921
0.009
3
8mer
240-263
0.009
1
7mer
1671-1698
0.008
4
6mer
1711-1731
0.003
0
LINC00243
hsa-miR-106a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399196
Biotype: lincRNA
Gene id: ENSG00000214894
Gene Name: LINC00243
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-270
0.015
1
8mer
908-927
0.007
1
6mer
978-1001
0.004
1
6mer
819-840
0.003
1
DNM3OS
hsa-miR-106a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4574-4599
0.005
1
7mer
6743-6766
0.005
1
6mer
779-798
0.005
3
6mer
7134-7151
0.004
2
7mer
4727-4752
0.003
1
6mer
5713-5739
0.003
5
6mer
754-771
0.003
1
6mer
4923-4934
0.002
5
XLOC_013981
hsa-miR-106a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028752
Biotype: transcript isomorph
Gene id: XLOC_013981
Gene Name: XLOC_013981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9284-9302
0.023
1
6mer
8313-8330
0.003
1
6mer
7658-7678
0.002
1
6mer
7540-7563
0.001
0
CH17-264L24.1
hsa-miR-106a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8221-8230
0.006
0
7mer
890-907
0.006
1
8mer
3404-3425
0.004
0
8mer
4744-4763
0.004
0
7mer
7121-7143
0.003
0
6mer
6503-6528
0.002
0
6mer
6978-7002
0.002
0
6mer
4174-4188
0.002
0
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