LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-643A5.2
hsa-miR-106a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558920
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-24
0.023
2
6mer
41-59
0.007
1
AC009501.4
hsa-miR-106a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429952
Biotype: antisense
Gene id: ENSG00000231609
Gene Name: AC009501.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
450-476
0.017
3
7mer
223-243
0.013
7
STARD13-AS
hsa-miR-106a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608205
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-54
0.030
4
LINC01140
hsa-miR-106a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000490006
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1272-1293
0.014
9
6mer
967-989
0.010
8
6mer
794-806
0.006
4
RP11-649E7.5
hsa-miR-106a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555043
Biotype: antisense
Gene id: ENSG00000258377
Gene Name: RP11-649E7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1345-1363
0.008
5
6mer
1579-1598
0.008
10
6mer
1978-2001
0.006
8
6mer
2081-2105
0.006
3
6mer
1502-1518
0.001
Not Conserved
HAGLR
hsa-miR-106a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425005
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-35
0.018
4
7mer
228-250
0.012
1
XLOC_007942
hsa-miR-106a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7514-7533
0.013
1
8mer
4492-4509
0.004
1
7mer
6070-6095
0.004
0
7mer
4861-4874
0.003
2
7mer
1371-1392
0.002
0
6mer
1265-1283
0.002
0
6mer
1363-1382
0.001
0
6mer
6538-6563
0.001
0
FGD5-AS1
hsa-miR-106a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424349
Biotype: antisense
Gene id: ENSG00000225733
Gene Name: FGD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
960-977
0.012
1
6mer
10-33
0.008
2
6mer
254-279
0.006
0
7mer
1092-1115
0.004
1
NPSR1-AS1
hsa-miR-106a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419766
Biotype: antisense
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4761-4782
0.011
0
9mer
3291-3315
0.005
1
6mer
4215-4233
0.004
1
6mer
3530-3555
0.003
3
6mer
1074-1086
0.002
0
6mer
1418-1440
0.002
0
6mer
2326-2347
0.002
1
6mer
2461-2478
0.001
1
STARD13-AS
hsa-miR-106a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609167
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-50
0.030
4
LINC00540
hsa-miR-106a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616974
Biotype: lincRNA
Gene id: ENSG00000276476
Gene Name: LINC00540
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-210
0.015
0
7mer
1377-1400
0.009
1
7mer
948-960
0.004
1
6mer
360-386
0.002
0
ATP1A1OS
hsa-miR-106a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027646.1
Biotype: antisense
Gene id: NR_027646.1 (gene)
Gene Name: ATP1A1OS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-52
0.030
4
CEBPZ-AS1
hsa-miR-106a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037880.1
Biotype: sense
Gene id: NR_037880.1 (gene)
Gene Name: CEBPZ-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
546-567
0.010
0
8mer
791-814
0.006
1
7mer
2410-2436
0.003
2
6mer
2224-2238
0.003
0
6mer
2355-2376
0.003
1
6mer
1888-1915
0.003
2
6mer
1263-1282
0.002
Not Conserved
RP4-671O14.7
hsa-miR-106a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12909-12928
0.008
1
8mer
9920-9938
0.004
0
7mer
2153-2174
0.003
3
6mer
18057-18080
0.003
0
8mer
8570-8589
0.003
0
6mer
17759-17774
0.003
1
8mer
5722-5745
0.002
Not Conserved
6mer
12051-12069
0.002
1
6mer
6164-6181
0.001
Not Conserved
6mer
14393-14416
0.001
1
LINC01483
hsa-miR-106a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433856
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2814-2837
0.011
1
7mer
559-586
0.006
1
7mer
1039-1048
0.005
2
6mer
856-872
0.003
2
8mer
1796-1819
0.003
Not Conserved
6mer
1479-1492
0.002
1
LINC00665
hsa-miR-106a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2512-2534
0.020
1
6mer
1906-1926
0.007
0
6mer
1877-1890
0.003
0
XLOC_003380
hsa-miR-106a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006740
Biotype: transcript isomorph
Gene id: XLOC_003380
Gene Name: XLOC_003380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2076-2093
0.025
1
6mer
564-588
0.005
1
HCG18
hsa-miR-106a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-113
0.020
1
7mer
1038-1062
0.006
1
6mer
1887-1909
0.002
1
6mer
1304-1308
0.002
0
XLOC_010622
hsa-miR-106a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021656
Biotype: transcript isomorph
Gene id: XLOC_010622
Gene Name: XLOC_010622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-390
0.006
0
6mer
5755-5773
0.005
1
8mer
4115-4138
0.004
1
6mer
5296-5311
0.004
0
6mer
592-613
0.003
1
6mer
4705-4726
0.003
1
6mer
5256-5282
0.002
1
6mer
2948-2968
0.002
2
6mer
2684-2707
0.001
1
XLOC_009255
hsa-miR-106a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019107
Biotype: transcript isomorph
Gene id: XLOC_009255
Gene Name: XLOC_009255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1932-1956
0.021
0
8mer
1559-1582
0.008
1
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