LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
ALDH1L1-AS2
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000500232
Biotype: antisense
Gene id: ENSG00000246022
Gene Name: ALDH1L1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1080-1102
0.017
0
8mer
561-579
0.014
0
DHRS4-AS1
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556379
Biotype: antisense
Gene id: ENSG00000215256
Gene Name: DHRS4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
78-93
0.009
4
7mer
699-725
0.008
0
7mer
1013-1036
0.007
Not Conserved
6mer
182-205
0.007
1
XLOC_014038
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028904
Biotype: transcript isomorph
Gene id: XLOC_014038
Gene Name: XLOC_014038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-276
0.010
0
7mer
1687-1704
0.006
0
6mer
2069-2096
0.006
1
6mer
2370-2382
0.006
1
6mer
1180-1197
0.003
1
RP11-712B9.2
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501356
Biotype: antisense
Gene id: ENSG00000245552
Gene Name: RP11-712B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1808-1832
0.022
0
8mer
1435-1458
0.009
1
RP11-333A23.4
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520259
Biotype: lincRNA
Gene id: ENSG00000253967
Gene Name: RP11-333A23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1186-1204
0.009
1
8mer
78-97
0.009
1
6mer
1877-1898
0.007
4
6mer
1708-1723
0.006
5
CTA-212A2.3
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13519-13538
0.004
0
8mer
2777-2796
0.004
0
7mer
8303-8319
0.004
1
8mer
7168-7187
0.003
0
7mer
9935-9954
0.003
0
8mer
3378-3401
0.003
0
7mer
6744-6759
0.003
1
8mer
6827-6846
0.002
1
6mer
7890-7910
0.002
1
6mer
13124-13144
0.002
0
6mer
12666-12689
0.001
Not Conserved
MIR4313
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
206-230
0.013
1
6mer
2848-2870
0.011
0
6mer
281-306
0.007
0
STARD13-AS
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608197
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
STARD13-AS
hsa-miR-106a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609588
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
STARD13-AS
hsa-miR-106a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609997
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
BHLHE40-AS1
hsa-miR-106a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615017
Biotype: antisense
Gene id: ENSG00000235831
Gene Name: BHLHE40-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-145
0.012
5
7mer
929-951
0.012
0
6mer
134-160
0.007
2
STARD13-AS
hsa-miR-106a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609608
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
STARD13-AS
hsa-miR-106a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610218
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
XLOC_011130
hsa-miR-106a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022413
Biotype: transcript isomorph
Gene id: XLOC_011130
Gene Name: XLOC_011130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-536
0.020
1
6mer
1405-1423
0.010
9
STARD13-AS
hsa-miR-106a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609335
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
XLOC_007135
hsa-miR-106a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014559
Biotype: transcript isomorph
Gene id: XLOC_007135
Gene Name: XLOC_007135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1541-1565
0.013
1
7mer
351-356
0.009
1
8mer
1130-1153
0.005
1
6mer
700-709
0.004
1
STARD13-AS
hsa-miR-106a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609536
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.031
4
RP11-342K6.1
hsa-miR-106a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604845
Biotype: antisense
Gene id: ENSG00000270696
Gene Name: RP11-342K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1583-1603
0.013
1
7mer
505-532
0.008
0
7mer
1165-1177
0.006
0
6mer
788-810
0.005
1
XLOC_006833
hsa-miR-106a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014749
Biotype: transcript isomorph
Gene id: XLOC_006833
Gene Name: XLOC_006833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2018-2036
0.009
1
8mer
91-110
0.009
1
6mer
2709-2730
0.007
4
6mer
2540-2555
0.006
5
LINC00470
hsa-miR-106a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000412816
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-274
0.015
1
7mer
315-340
0.011
1
7mer
1170-1187
0.004
1
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