LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-106a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
HCG18
hsa-miR-106a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-113
0.020
1
7mer
1038-1062
0.005
1
6mer
4115-4137
0.003
1
6mer
1887-1909
0.002
1
6mer
1304-1308
0.002
0
CTD-2130F23.1
hsa-miR-106a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506429
Biotype: lincRNA
Gene id: ENSG00000248533
Gene Name: CTD-2130F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-42
0.032
0
AC096669.1
hsa-miR-106a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422203
Biotype: lincRNA
Gene id: ENSG00000225588
Gene Name: AC096669.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-576
0.032
0
RP11-629B11.5
hsa-miR-106a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000600169
Biotype: antisense
Gene id: ENSG00000269559
Gene Name: RP11-629B11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
759-776
0.014
1
7mer
1044-1069
0.008
3
6mer
133-140
0.005
1
6mer
1284-1301
0.004
1
6mer
1265-1281
0.001
1
XXyac-YM21GA2.7
hsa-miR-106a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000399186
Biotype: antisense
Gene id: ENSG00000214888
Gene Name: XXyac-YM21GA2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7-34
0.022
0
8mer
1016-1038
0.010
Not Conserved
XLOC_006722
hsa-miR-106a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014625
Biotype: transcript isomorph
Gene id: XLOC_006722
Gene Name: XLOC_006722
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-449
0.032
Not Conserved
RP11-679C8.2
hsa-miR-106a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503073
Biotype: antisense
Gene id: ENSG00000250938
Gene Name: RP11-679C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-501
0.012
1
6mer
354-368
0.006
1
6mer
1752-1767
0.005
3
6mer
1989-2014
0.005
1
6mer
1912-1931
0.004
4
RP11-116O18.3
hsa-miR-106a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586213
Biotype: antisense
Gene id: ENSG00000267193
Gene Name: RP11-116O18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-235
0.021
1
6mer
232-252
0.011
5
KIZ-AS1
hsa-miR-106a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-500
0.014
1
7mer
5144-5161
0.007
2
8mer
4598-4617
0.005
0
6mer
1244-1267
0.003
1
6mer
3890-3909
0.003
4
LINC01189
hsa-miR-106a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2286-2307
0.014
0
6mer
908-924
0.010
1
6mer
216-241
0.007
0
GS1-358P8.4
hsa-miR-106a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1925-1940
0.017
6
6mer
2158-2180
0.004
5
6mer
311-329
0.004
1
6mer
4161-4165
0.003
0
6mer
2954-2976
0.002
3
6mer
3598-3613
0.002
1
XLOC_000951
hsa-miR-106a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001623
Biotype: transcript isomorph
Gene id: XLOC_000951
Gene Name: XLOC_000951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-221
0.031
2
LINC00657
hsa-miR-106a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000565493
Biotype: lincRNA
Gene id: ENSG00000260032
Gene Name: LINC00657
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
32-53
0.008
3
6mer
501-516
0.004
Not Conserved
6mer
4386-4409
0.003
3
6mer
2577-2596
0.003
5
8mer
1640-1659
0.003
1
6mer
2875-2891
0.003
3
6mer
3516-3539
0.003
4
6mer
3186-3202
0.002
1
6mer
1950-1969
0.002
1
RP11-67L2.2
hsa-miR-106a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610128
Biotype: lincRNA
Gene id: ENSG00000273033
Gene Name: RP11-67L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4026-4047
0.010
1
6mer
4971-4994
0.009
7
6mer
4930-4944
0.007
5
6mer
408-422
0.004
0
6mer
3847-3866
0.002
1
RP11-90P5.2
hsa-miR-106a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520598
Biotype: antisense
Gene id: ENSG00000253356
Gene Name: RP11-90P5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-524
0.015
3
7mer
109-131
0.006
1
6mer
345-354
0.005
1
6mer
381-406
0.005
3
RP11-128N14.5
hsa-miR-106a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613261
Biotype: sense_intronic
Gene id: ENSG00000276573
Gene Name: RP11-128N14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-142
0.031
2
RP11-415D17.3
hsa-miR-106a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440220
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-252
0.031
9
RP11-12A2.3
hsa-miR-106a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454788
Biotype: lincRNA
Gene id: ENSG00000238099
Gene Name: RP11-12A2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-556
0.012
4
7mer
746-771
0.010
2
6mer
281-307
0.005
0
6mer
1168-1194
0.004
0
LINC01088
hsa-miR-106a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505149
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-448
0.024
11
6mer
554-581
0.007
3
XLOC_011064
hsa-miR-106a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022786
Biotype: transcript isomorph
Gene id: XLOC_011064
Gene Name: XLOC_011064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-59
0.022
2
7mer
1270-1291
0.005
1
6mer
2520-2539
0.002
3
6mer
2102-2124
0.002
3
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept