LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-756H6.1
hsa-miR-106a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547552
Biotype: lincRNA
Gene id: ENSG00000258001
Gene Name: RP11-756H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-235
0.033
2
RP1-205F14P.1
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625043
Biotype: lincRNA
Gene id: ENSG00000280445
Gene Name: RP1-205F14P.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-274
0.014
5
6mer
226-240
0.012
7
6mer
320-334
0.007
4
AP001604.3
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420186
Biotype: lincRNA
Gene id: ENSG00000231236
Gene Name: AP001604.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1369-1384
0.026
4
6mer
630-650
0.005
1
6mer
1320-1337
0.001
0
RP11-526P5.2
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438753
Biotype: lincRNA
Gene id: ENSG00000235281
Gene Name: RP11-526P5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-655
0.032
2
RP11-611E13.2
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553135
Biotype: antisense
Gene id: ENSG00000257815
Gene Name: RP11-611E13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
175-201
0.032
1
RP6-201G10.2
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561973
Biotype: lincRNA
Gene id: ENSG00000260118
Gene Name: RP6-201G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
570-586
0.014
2
6mer
247-271
0.010
1
6mer
933-952
0.005
1
6mer
549-562
0.003
1
SPAG5-AS1
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000556050
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-749
0.018
0
8mer
781-804
0.015
0
RP11-503C24.2
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424343
Biotype: lincRNA
Gene id: ENSG00000237987
Gene Name: RP11-503C24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-115
0.018
1
6mer
128-147
0.015
2
RP4-760C5.5
hsa-miR-106a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
128-147
0.014
1
6mer
3798-3825
0.007
0
6mer
3447-3471
0.004
0
6mer
4278-4303
0.004
Not Conserved
6mer
1111-1134
0.003
Not Conserved
XLOC_013502
hsa-miR-106a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
123-142
0.014
1
6mer
3793-3820
0.007
0
6mer
3442-3466
0.004
0
6mer
4273-4298
0.004
Not Conserved
6mer
1106-1129
0.003
Not Conserved
XLOC_014420
hsa-miR-106a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029355
Biotype: transcript isomorph
Gene id: XLOC_014420
Gene Name: XLOC_014420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-557
0.017
1
7mer
1632-1646
0.007
1
7mer
1197-1214
0.004
0
6mer
815-834
0.004
1
RP11-21L19.1
hsa-miR-106a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534587
Biotype: antisense
Gene id: ENSG00000254418
Gene Name: RP11-21L19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-36
0.032
7
RP11-34C15.2
hsa-miR-106a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420082
Biotype: lincRNA
Gene id: ENSG00000230096
Gene Name: RP11-34C15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-154
0.018
0
6mer
161-186
0.008
2
6mer
66-89
0.006
1
AC000036.4
hsa-miR-106a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449652
Biotype: antisense
Gene id: ENSG00000225929
Gene Name: AC000036.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-563
0.017
1
7mer
1638-1652
0.007
1
7mer
1203-1220
0.004
0
6mer
821-840
0.004
1
RP11-337N6.1
hsa-miR-106a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606200
Biotype: antisense
Gene id: ENSG00000271996
Gene Name: RP11-337N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-147
0.024
0
8mer
375-398
0.009
Not Conserved
AC092669.6
hsa-miR-106a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412313
Biotype: lincRNA
Gene id: ENSG00000225815
Gene Name: AC092669.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
884-908
0.032
4
RP11-395P13.6
hsa-miR-106a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509010
Biotype: lincRNA
Gene id: ENSG00000251554
Gene Name: RP11-395P13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-150
0.022
0
8mer
245-263
0.010
0
CTD-2081C10.7
hsa-miR-106a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606482
Biotype: lincRNA
Gene id: ENSG00000272416
Gene Name: CTD-2081C10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-456
0.019
5
7mer
297-311
0.009
2
6mer
326-345
0.004
1
RP11-2A4.4
hsa-miR-106a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3483-3504
0.024
1
6mer
595-611
0.007
4
6mer
3266-3282
0.002
1
CTD-2017D11.1
hsa-miR-106a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1779-1798
0.020
1
6mer
1125-1147
0.012
1
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