LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
GMDS-AS1
hsa-miR-106a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505870
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7907-7932
0.009
6
6mer
8165-8181
0.007
4
6mer
6116-6137
0.004
6
6mer
5726-5752
0.003
5
6mer
3843-3860
0.002
0
6mer
3585-3604
0.002
1
6mer
1291-1318
0.002
1
6mer
5385-5410
0.002
1
6mer
7756-7778
0.002
0
6mer
5619-5641
0.001
1
RP11-64C1.1
hsa-miR-106a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492683
Biotype: lincRNA
Gene id: ENSG00000240708
Gene Name: RP11-64C1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1459-1475
0.019
0
7mer
1298-1323
0.010
0
6mer
1469-1491
0.004
0
RP11-166B2.3
hsa-miR-106a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-870
0.014
0
8mer
85-108
0.014
1
6mer
1267-1290
0.005
1
RP11-87E22.2
hsa-miR-106a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000511897
Biotype: antisense
Gene id: ENSG00000248738
Gene Name: RP11-87E22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3643-3661
0.026
0
7mer
2472-2488
0.007
2
XLOC_013467
hsa-miR-106a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028113
Biotype: transcript isomorph
Gene id: XLOC_013467
Gene Name: XLOC_013467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2451-2470
0.027
0
8mer
1490-1511
0.006
1
RP11-557H15.4
hsa-miR-106a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607531
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
143-170
0.025
Not Conserved
6mer
52-70
0.008
4
SSBP3-AS1
hsa-miR-106a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103541.1
Biotype: antisense
Gene id: NR_103541.1 (gene)
Gene Name: SSBP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2532-2553
0.022
7
6mer
198-215
0.007
1
7mer
1852-1868
0.004
0
RP11-46H11.3
hsa-miR-106a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
820-843
0.016
0
6mer
2259-2285
0.010
0
6mer
1292-1306
0.007
0
THRB-AS1
hsa-miR-106a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609230
Biotype: lincRNA
Gene id: ENSG00000228791
Gene Name: THRB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-342
0.033
1
XLOC_010219
hsa-miR-106a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020953
Biotype: transcript isomorph
Gene id: XLOC_010219
Gene Name: XLOC_010219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1118-1141
0.019
Not Conserved
7mer
153-172
0.010
0
6mer
629-647
0.003
0
XLOC_013385
hsa-miR-106a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026820
Biotype: transcript isomorph
Gene id: XLOC_013385
Gene Name: XLOC_013385
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2213-2230
0.017
0
7mer
1775-1798
0.006
1
6mer
1993-2018
0.006
1
6mer
1606-1629
0.003
1
C1orf132
hsa-miR-106a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8933-8958
0.006
0
8mer
12711-12730
0.006
1
7mer
5585-5607
0.003
2
7mer
7918-7934
0.003
1
7mer
12401-12425
0.003
1
6mer
7270-7294
0.003
0
6mer
11393-11417
0.002
0
6mer
1355-1369
0.002
1
6mer
5132-5145
0.002
2
6mer
10381-10405
0.002
2
6mer
5029-5048
0.001
0
RP5-1039K5.18
hsa-miR-106a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609265
Biotype: lincRNA
Gene id: ENSG00000273214
Gene Name: RP5-1039K5.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-203
0.028
1
6mer
632-650
0.005
0
ALDH1L1-AS2
hsa-miR-106a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000500525
Biotype: antisense
Gene id: ENSG00000246022
Gene Name: ALDH1L1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
995-1017
0.018
0
8mer
476-494
0.015
0
RP11-366L5.1
hsa-miR-106a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567327
Biotype: antisense
Gene id: ENSG00000260742
Gene Name: RP11-366L5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3075-3102
0.010
3
6mer
3282-3308
0.006
2
7mer
1994-2012
0.006
3
8mer
1344-1367
0.004
1
6mer
887-906
0.003
1
6mer
2900-2919
0.003
1
6mer
1835-1857
0.001
0
RP11-567J20.2
hsa-miR-106a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524011
Biotype: lincRNA
Gene id: ENSG00000253688
Gene Name: RP11-567J20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-94
0.033
0
XLOC_005392
hsa-miR-106a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8600-8626
0.015
0
6mer
291-299
0.004
0
7mer
4128-4154
0.003
0
6mer
6738-6764
0.002
1
6mer
4932-4957
0.002
0
6mer
6932-6956
0.002
1
6mer
3535-3553
0.002
0
6mer
1580-1606
0.001
0
6mer
5007-5025
0.001
1
XLOC_004924
hsa-miR-106a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8119-8142
0.005
1
8mer
1517-1536
0.005
1
8mer
5764-5783
0.004
1
8mer
2406-2429
0.003
1
6mer
5357-5378
0.003
1
6mer
4834-4854
0.003
1
6mer
8887-8909
0.003
3
9mer
6280-6304
0.002
0
6mer
6560-6575
0.002
0
6mer
5955-5977
0.002
1
XLOC_009043
hsa-miR-106a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-160
0.033
0
XLOC_004805
hsa-miR-106a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010927
Biotype: transcript isomorph
Gene id: XLOC_004805
Gene Name: XLOC_004805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-932
0.029
1
6mer
77-99
0.003
Not Conserved
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