LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-537P22.2
hsa-miR-106a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554595
Biotype: sense_intronic
Gene id: ENSG00000258827
Gene Name: RP11-537P22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-19
0.028
1
6mer
263-279
0.005
1
STK4-AS1
hsa-miR-106a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434401
Biotype: lincRNA
Gene id: ENSG00000227477
Gene Name: STK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
995-1018
0.017
1
9mer
497-522
0.007
1
6mer
45-69
0.007
1
6mer
662-687
0.002
1
RP11-451G4.2
hsa-miR-106a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489090
Biotype: lincRNA
Gene id: ENSG00000240045
Gene Name: RP11-451G4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-279
0.019
1
6mer
514-533
0.009
5
7mer
486-508
0.005
0
RP11-513O17.3
hsa-miR-106a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522622
Biotype: lincRNA
Gene id: ENSG00000253614
Gene Name: RP11-513O17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2533-2556
0.021
0
6mer
2349-2366
0.006
0
6mer
748-771
0.003
0
6mer
1989-2000
0.002
0
6mer
2017-2031
0.002
0
CTC-369A16.2
hsa-miR-106a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510004
Biotype: lincRNA
Gene id: ENSG00000251421
Gene Name: CTC-369A16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-460
0.024
5
6mer
95-112
0.009
4
XLOC_012676
hsa-miR-106a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026329
Biotype: transcript isomorph
Gene id: XLOC_012676
Gene Name: XLOC_012676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-239
0.021
1
8mer
308-335
0.012
0
SCARNA15
hsa-miR-106a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000607520
Biotype: retained_intron
Gene id: ENSG00000252690
Gene Name: SCARNA15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
788-808
0.010
1
7mer
3650-3655
0.005
4
6mer
644-660
0.005
1
6mer
3920-3937
0.004
0
6mer
3539-3559
0.003
1
6mer
2881-2906
0.002
0
6mer
795-821
0.002
0
6mer
2090-2112
0.002
2
ZNF561-AS1
hsa-miR-106a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592851
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-87
0.033
1
AC005754.7
hsa-miR-106a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607216
Biotype: antisense
Gene id: ENSG00000272154
Gene Name: AC005754.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-36
0.023
0
7mer
402-416
0.011
3
LOC100506639
hsa-miR-106a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
833-843
0.033
1
RP11-83B20.1
hsa-miR-106a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543970
Biotype: lincRNA
Gene id: ENSG00000214650
Gene Name: RP11-83B20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1072
0.029
1
6mer
251-268
0.004
0
RP11-303E16.2
hsa-miR-106a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566639
Biotype: sense_intronic
Gene id: ENSG00000261061
Gene Name: RP11-303E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-33
0.030
0
6mer
314-318
0.003
Not Conserved
CTD-2184D3.7
hsa-miR-106a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560613
Biotype: antisense
Gene id: ENSG00000259709
Gene Name: CTD-2184D3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-383
0.033
1
SSBP3-AS1
hsa-miR-106a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000361350
Biotype: antisense
Gene id: ENSG00000198711
Gene Name: SSBP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2535-2556
0.022
7
6mer
201-218
0.007
1
7mer
1855-1871
0.004
0
XLOC_005514
hsa-miR-106a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012001
Biotype: transcript isomorph
Gene id: XLOC_005514
Gene Name: XLOC_005514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1410-1433
0.011
1
7mer
2080-2085
0.010
Not Conserved
6mer
2375-2393
0.005
1
6mer
871-889
0.004
2
6mer
1174-1199
0.002
0
7mer
1192-1212
0.001
1
XLOC_009632
hsa-miR-106a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020287
Biotype: transcript isomorph
Gene id: XLOC_009632
Gene Name: XLOC_009632
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
849-871
0.020
1
7mer
35-57
0.010
1
6mer
90-115
0.003
0
RP11-557H15.4
hsa-miR-106a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434593
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
132-159
0.025
Not Conserved
6mer
41-59
0.008
4
LINC00938
hsa-miR-106a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2887-2906
0.006
1
6mer
89-113
0.006
1
6mer
8690-8703
0.003
2
6mer
8515-8537
0.003
1
7mer
8669-8696
0.003
2
7mer
5755-5772
0.002
0
6mer
7207-7231
0.002
4
6mer
5889-5905
0.002
4
6mer
2619-2642
0.002
Not Conserved
6mer
1498-1517
0.001
2
6mer
6092-6110
0.001
0
6mer
6000-6019
0.001
1
XLOC_010017
hsa-miR-106a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1239-1260
0.010
3
6mer
2062-2074
0.010
5
6mer
27-46
0.007
1
6mer
3-23
0.006
1
MALAT1
hsa-miR-106a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-520
0.014
1
7mer
5506-5522
0.004
2
7mer
7721-7735
0.003
2
6mer
6213-6237
0.002
2
6mer
887-903
0.002
Not Conserved
6mer
5849-5875
0.002
1
6mer
1166-1190
0.002
0
6mer
1974-1979
0.002
0
6mer
4670-4693
0.001
0
6mer
4836-4861
0.001
Not Conserved
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