LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-586K12.10
hsa-miR-106a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
823-849
0.013
0
6mer
1889-1903
0.011
0
6mer
1029-1052
0.011
0
RP11-701P16.2
hsa-miR-106a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508020
Biotype: antisense
Gene id: ENSG00000251139
Gene Name: RP11-701P16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
576-593
0.030
3
7mer
201-225
0.005
0
MAGI1-IT1
hsa-miR-106a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460754
Biotype: sense_intronic
Gene id: ENSG00000272610
Gene Name: MAGI1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-382
0.029
6
6mer
1177-1195
0.003
1
6mer
1062-1086
0.002
1
6mer
1145-1162
0.001
0
RP11-234K24.3
hsa-miR-106a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441208
Biotype: antisense
Gene id: ENSG00000232406
Gene Name: RP11-234K24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1780-1800
0.018
3
6mer
1962-1982
0.007
7
6mer
2604-2619
0.005
1
6mer
1305-1330
0.003
2
6mer
1760-1785
0.002
2
XLOC_004053
hsa-miR-106a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008556
Biotype: transcript isomorph
Gene id: XLOC_004053
Gene Name: XLOC_004053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-561
0.020
Not Conserved
6mer
1151-1175
0.005
2
6mer
572-589
0.004
0
6mer
2495-2509
0.004
1
6mer
712-729
0.002
0
RP11-218I7.2
hsa-miR-106a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
341-359
0.035
1
XLOC_003130
hsa-miR-106a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007175
Biotype: transcript isomorph
Gene id: XLOC_003130
Gene Name: XLOC_003130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-35
0.032
0
6mer
646-663
0.003
0
RP11-407B7.1
hsa-miR-106a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432154
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2055-2076
0.022
2
6mer
765-787
0.003
2
6mer
877-895
0.003
0
6mer
996-1012
0.002
1
6mer
982-1002
0.002
0
6mer
2171-2193
0.002
1
XLOC_011693
hsa-miR-106a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1586-1601
0.018
0
6mer
1669-1693
0.016
0
XLOC_003146
hsa-miR-106a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006523
Biotype: transcript isomorph
Gene id: XLOC_003146
Gene Name: XLOC_003146
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1157-1179
0.011
3
7mer
692-718
0.010
1
6mer
1458-1485
0.007
4
8mer
1668-1692
0.007
0
LOC101929154
hsa-miR-106a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105012.1
Biotype: lincRNA
Gene id: NR_105012.1 (gene)
Gene Name: LOC101929154
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-294
0.035
0
RNF144A-AS1
hsa-miR-106a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424351
Biotype: retained_intron
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1428-1445
0.018
5
8mer
244-263
0.009
1
8mer
1875-1898
0.005
0
6mer
809-831
0.003
Not Conserved
LINC01104
hsa-miR-106a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452354
Biotype: lincRNA
Gene id: ENSG00000232084
Gene Name: LINC01104
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-39
0.020
6
8mer
2859-2882
0.009
1
6mer
2354-2380
0.003
1
6mer
2461-2484
0.003
2
SOX2-OT
hsa-miR-106a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597347
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
814-839
0.029
4
6mer
1228-1244
0.005
5
RP11-281P23.1
hsa-miR-106a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515343
Biotype: lincRNA
Gene id: ENSG00000251152
Gene Name: RP11-281P23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
769-785
0.009
3
7mer
145-155
0.008
1
6mer
69-96
0.005
0
7mer
3130-3153
0.004
0
7mer
1858-1878
0.003
1
6mer
1126-1148
0.003
0
6mer
1796-1817
0.002
0
6mer
2070-2093
0.001
1
RP13-631K18.3
hsa-miR-106a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000476130
Biotype: lincRNA
Gene id: ENSG00000254991
Gene Name: RP13-631K18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-70
0.018
5
7mer
352-379
0.016
1
SNHG16
hsa-miR-106a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587838
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
656-681
0.034
1
XLOC_000281
hsa-miR-106a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001015
Biotype: transcript isomorph
Gene id: XLOC_000281
Gene Name: XLOC_000281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-304
0.028
3
6mer
1385-1412
0.006
0
RP11-242C19.2
hsa-miR-106a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000497961
Biotype: sense_intronic
Gene id: ENSG00000241886
Gene Name: RP11-242C19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
454-477
0.024
Not Conserved
6mer
115-129
0.006
2
6mer
351-365
0.004
2
XLOC_014244
hsa-miR-106a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029809
Biotype: transcript isomorph
Gene id: XLOC_014244
Gene Name: XLOC_014244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
997-1020
0.034
1
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