LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012728
hsa-miR-106a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5037-5060
0.009
0
8mer
4237-4258
0.008
1
7mer
4567-4585
0.007
0
7mer
1366-1393
0.006
2
6mer
4102-4126
0.004
0
6mer
3804-3827
0.002
1
CKMT2-AS1
hsa-miR-106a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502041
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
461-481
0.019
1
8mer
850-862
0.015
0
6mer
832-855
0.003
1
ZNF561-AS1
hsa-miR-106a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591056
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-115
0.029
1
6mer
484-509
0.007
0
SNHG24
hsa-miR-106a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554693
Biotype: lincRNA
Gene id: ENSG00000271417
Gene Name: SNHG24
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-730
0.027
0
7mer
881-899
0.009
1
XLOC_013363
hsa-miR-106a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026818
Biotype: transcript isomorph
Gene id: XLOC_013363
Gene Name: XLOC_013363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2059-2075
0.013
0
6mer
420-437
0.008
0
6mer
3194-3217
0.007
0
6mer
2606-2627
0.005
0
6mer
2258-2284
0.003
0
LINC00184
hsa-miR-106a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429269
Biotype: lincRNA
Gene id: ENSG00000224939
Gene Name: LINC00184
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2147-2166
0.021
1
9mer
1194-1216
0.009
1
6mer
1323-1342
0.006
5
RP4-545C24.1
hsa-miR-106a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000460955
Biotype: antisense
Gene id: ENSG00000244198
Gene Name: RP4-545C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-555
0.036
1
LAMTOR5-AS1
hsa-miR-106a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608602
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
930-950
0.031
1
6mer
854-875
0.005
1
C12orf36
hsa-miR-106a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318426
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1991-2010
0.027
1
6mer
414-432
0.005
1
6mer
1971-1991
0.002
Not Conserved
6mer
1844-1870
0.002
0
CTD-3193O13.12
hsa-miR-106a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000539278
Biotype: antisense
Gene id: ENSG00000214248
Gene Name: CTD-3193O13.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-357
0.021
4
6mer
504-522
0.007
6
8mer
3821-3839
0.005
1
6mer
4054-4078
0.003
3
AC138430.4
hsa-miR-106a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586064
Biotype: retained_intron
Gene id: ENSG00000267629
Gene Name: AC138430.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-160
0.025
1
7mer
856-872
0.010
3
PRICKLE2-AS1
hsa-miR-106a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4385-4409
0.009
2
6mer
6432-6456
0.006
Not Conserved
7mer
661-682
0.005
4
7mer
949-973
0.004
4
7mer
1506-1527
0.003
2
6mer
6120-6142
0.003
0
6mer
1665-1673
0.003
9
6mer
3601-3624
0.002
6
RP11-417O18.2
hsa-miR-106a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620052
Biotype: lincRNA
Gene id: ENSG00000276487
Gene Name: RP11-417O18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-458
0.035
1
OXCT1-AS1
hsa-miR-106a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508458
Biotype: antisense
Gene id: ENSG00000248668
Gene Name: OXCT1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1420-1446
0.011
7
6mer
1652-1673
0.010
2
7mer
1398-1413
0.007
1
6mer
1139-1149
0.004
Not Conserved
6mer
1515-1533
0.003
1
XLOC_009517
hsa-miR-106a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019720
Biotype: transcript isomorph
Gene id: XLOC_009517
Gene Name: XLOC_009517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-248
0.025
2
7mer
1094-1111
0.008
1
6mer
879-904
0.003
Not Conserved
RP4-547N15.3
hsa-miR-106a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621423
Biotype: sense_intronic
Gene id: ENSG00000275678
Gene Name: RP4-547N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
694-717
0.014
1
6mer
392-402
0.005
1
6mer
1626-1649
0.005
1
6mer
969-985
0.004
2
6mer
1303-1321
0.004
1
6mer
1081-1104
0.003
1
RP11-50C13.2
hsa-miR-106a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561202
Biotype: sense_intronic
Gene id: ENSG00000259476
Gene Name: RP11-50C13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1595-1617
0.015
2
7mer
1282-1305
0.014
5
7mer
1303-1323
0.006
4
AC005083.1
hsa-miR-106a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430859
Biotype: lincRNA
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
704-728
0.035
0
MIR181A1HG
hsa-miR-106a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_040073.1
Biotype: lincRNA
Gene id: NR_040073.1 (gene)
Gene Name: MIR181A1HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-535
0.035
3
XLOC_006462
hsa-miR-106a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013823
Biotype: transcript isomorph
Gene id: XLOC_006462
Gene Name: XLOC_006462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-35
0.035
0
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