LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-856M7.6
hsa-miR-106a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583691
Biotype: lincRNA
Gene id: ENSG00000266604
Gene Name: RP11-856M7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-208
0.023
0
6mer
183-202
0.014
0
CTD-2541J13.1
hsa-miR-106a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562669
Biotype: lincRNA
Gene id: ENSG00000260578
Gene Name: CTD-2541J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-220
0.015
1
7mer
573-594
0.008
Not Conserved
7mer
1104-1124
0.006
1
8mer
2247-2272
0.004
Not Conserved
6mer
1389-1403
0.002
1
6mer
739-762
0.002
Not Conserved
XLOC_012227
hsa-miR-106a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025175
Biotype: transcript isomorph
Gene id: XLOC_012227
Gene Name: XLOC_012227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1710-1734
0.037
0
TMEM51-AS1
hsa-miR-106a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-470
0.029
1
7mer
958-981
0.004
0
6mer
5714-5730
0.002
0
6mer
6048-6065
0.001
1
XLOC_003651
hsa-miR-106a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007401
Biotype: transcript isomorph
Gene id: XLOC_003651
Gene Name: XLOC_003651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1604-1615
0.023
0
6mer
1025-1046
0.009
1
6mer
1374-1399
0.005
0
RP11-774O3.3
hsa-miR-106a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
265-285
0.010
2
6mer
109-133
0.006
1
6mer
502-526
0.005
0
6mer
2319-2335
0.003
1
7mer
2155-2177
0.002
Not Conserved
6mer
1550-1560
0.001
1
6mer
2065-2089
0.001
0
6mer
2014-2038
0.001
0
6mer
1805-1825
0.001
0
6mer
1499-1509
0.001
1
6mer
1652-1673
0.001
1
6mer
1963-1984
0.001
0
6mer
1754-1774
0.001
1
6mer
1703-1727
0.001
0
RP11-819C21.1
hsa-miR-106a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
451-470
0.013
1
8mer
3741-3764
0.009
0
6mer
3913-3928
0.005
1
6mer
886-912
0.005
2
6mer
3406-3422
0.004
1
6mer
1733-1744
0.002
0
RP4-717I23.3
hsa-miR-106a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446528
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-338
0.024
3
6mer
84-103
0.013
8
RP11-395I6.3
hsa-miR-106a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567102
Biotype: sense_overlapping
Gene id: ENSG00000260296
Gene Name: RP11-395I6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-59
0.027
0
7mer
284-308
0.010
0
LINC00554
hsa-miR-106a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564841
Biotype: antisense
Gene id: ENSG00000260738
Gene Name: LINC00554
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2022-2044
0.014
10
6mer
1654-1681
0.007
10
6mer
196-216
0.006
1
6mer
376-400
0.005
2
6mer
1140-1164
0.004
5
LAMTOR5-AS1
hsa-miR-106a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608253
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-845
0.029
1
6mer
39-64
0.008
1
RP11-34P13.8
hsa-miR-106a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000495576
Biotype: lincRNA
Gene id: ENSG00000239945
Gene Name: RP11-34P13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-271
0.037
Not Conserved
RP11-798L4.1
hsa-miR-106a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000381217
Biotype: lincRNA
Gene id: ENSG00000205682
Gene Name: RP11-798L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1780-1805
0.025
0
8mer
422-445
0.012
0
RP11-380B4.3
hsa-miR-106a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1000-1017
0.010
2
7mer
495-520
0.008
0
7mer
1006-1024
0.005
1
7mer
2323-2345
0.004
0
6mer
1866-1876
0.003
2
6mer
3784-3796
0.002
1
7mer
3091-3108
0.002
0
6mer
3137-3155
0.001
1
6mer
3910-3932
0.001
0
AL133243.2
hsa-miR-106a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617415
Biotype: sense_intronic
Gene id: ENSG00000276517
Gene Name: AL133243.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2971-2991
0.014
1
6mer
2909-2934
0.008
1
6mer
2921-2943
0.008
2
6mer
944-948
0.003
0
6mer
719-741
0.003
0
ALMS1-IT1
hsa-miR-106a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046762.1
Biotype: sense
Gene id: NR_046762.1 (gene)
Gene Name: ALMS1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
338-350
0.012
1
6mer
106-126
0.011
1
6mer
424-438
0.007
0
6mer
152-164
0.006
0
CTD-2377D24.6
hsa-miR-106a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000478824
Biotype: lincRNA
Gene id: ENSG00000244649
Gene Name: CTD-2377D24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1377-1401
0.037
0
CTC-529L17.2
hsa-miR-106a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503489
Biotype: lincRNA
Gene id: ENSG00000249984
Gene Name: CTC-529L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-181
0.037
2
RP11-872J21.5
hsa-miR-106a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000618976
Biotype: sense_intronic
Gene id: ENSG00000276182
Gene Name: RP11-872J21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-570
0.037
7
RP4-717I23.3
hsa-miR-106a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429859
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-307
0.025
3
6mer
53-72
0.012
8
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