LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-669C19.1
hsa-miR-106a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566804
Biotype: lincRNA
Gene id: ENSG00000261734
Gene Name: RP11-669C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-641
0.018
4
7mer
1253-1278
0.009
1
6mer
327-340
0.007
1
6mer
1524-1541
0.004
2
AC009299.2
hsa-miR-106a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435692
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.024
11
6mer
168-185
0.015
11
RP5-898I4.1
hsa-miR-106a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623740
Biotype: sense_overlapping
Gene id: ENSG00000280395
Gene Name: RP5-898I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3397-3414
0.015
Not Conserved
6mer
3657-3676
0.008
1
7mer
2442-2468
0.005
0
6mer
124-143
0.005
1
7mer
1166-1183
0.003
1
6mer
1984-2006
0.002
0
AC087430.1
hsa-miR-106a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-204
0.022
1
8mer
3430-3453
0.009
1
7mer
2509-2522
0.005
0
6mer
1272-1291
0.003
0
RP11-108M12.3
hsa-miR-106a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554160
Biotype: lincRNA
Gene id: ENSG00000258592
Gene Name: RP11-108M12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-253
0.028
5
6mer
685-703
0.006
5
6mer
212-239
0.004
0
XLOC_003061
hsa-miR-106a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-86
0.010
1
6mer
871-894
0.005
0
7mer
503-516
0.004
0
8mer
4692-4715
0.004
1
6mer
6267-6284
0.003
1
6mer
4888-4910
0.003
1
6mer
4425-4429
0.003
0
6mer
5845-5861
0.002
1
6mer
1224-1240
0.002
1
6mer
3943-3967
0.002
0
6mer
5776-5796
0.001
1
RP4-621B10.8
hsa-miR-106a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609675
Biotype: lincRNA
Gene id: ENSG00000273487
Gene Name: RP4-621B10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
816-822
0.038
3
LINC00116
hsa-miR-106a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027063.1
Biotype: sense
Gene id: NR_027063.1 (gene)
Gene Name: LINC00116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-57
0.038
8
XLOC_012724
hsa-miR-106a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026372
Biotype: transcript isomorph
Gene id: XLOC_012724
Gene Name: XLOC_012724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1301-1327
0.021
0
8mer
1072-1086
0.014
1
6mer
577-596
0.003
0
RP11-379K17.4
hsa-miR-106a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483289
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2705-2730
0.011
1
8mer
4420-4438
0.008
1
6mer
5809-5829
0.006
3
6mer
391-411
0.005
1
6mer
713-726
0.003
1
6mer
953-975
0.003
1
6mer
4903-4923
0.002
0
6mer
4055-4076
0.001
1
RP11-417L19.2
hsa-miR-106a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542763
Biotype: lincRNA
Gene id: ENSG00000256955
Gene Name: RP11-417L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-583
0.038
1
RP11-342K6.2
hsa-miR-106a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604219
Biotype: sense_intronic
Gene id: ENSG00000271452
Gene Name: RP11-342K6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-162
0.038
5
AC096772.6
hsa-miR-106a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1056-1082
0.022
0
6mer
268-287
0.006
1
6mer
448-453
0.005
0
6mer
1013-1032
0.004
0
RP11-714L20.1
hsa-miR-106a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507365
Biotype: lincRNA
Gene id: ENSG00000251632
Gene Name: RP11-714L20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1974-1986
0.014
0
8mer
177-200
0.008
0
7mer
730-735
0.006
1
6mer
2079-2095
0.004
4
6mer
2153-2163
0.003
0
6mer
756-773
0.002
1
RP11-232C2.3
hsa-miR-106a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555954
Biotype: antisense
Gene id: ENSG00000258719
Gene Name: RP11-232C2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-91
0.032
2
8mer+mismatch
534-554
0.003
0
6mer
391-413
0.002
Not Conserved
SUCLG2-AS1
hsa-miR-106a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482677
Biotype: lincRNA
Gene id: ENSG00000241316
Gene Name: SUCLG2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
758-779
0.024
0
8mer
1599-1625
0.005
0
6mer
38-56
0.003
0
6mer
1439-1461
0.003
1
6mer
1058-1084
0.002
Not Conserved
XLOC_001265
hsa-miR-106a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001882
Biotype: transcript isomorph
Gene id: XLOC_001265
Gene Name: XLOC_001265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4899-4923
0.014
0
8mer
397-415
0.011
1
7mer
1885-1911
0.005
0
6mer
1535-1547
0.003
2
6mer
6437-6460
0.002
1
6mer
5235-5262
0.002
1
RP11-212I21.4
hsa-miR-106a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576365
Biotype: lincRNA
Gene id: ENSG00000261997
Gene Name: RP11-212I21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3164-3183
0.012
3
7mer
437-448
0.008
2
7mer
777-794
0.006
0
6mer
3609-3619
0.006
3
6mer
2168-2186
0.003
3
6mer
2599-2615
0.002
1
LINC01024
hsa-miR-106a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521563
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-134
0.029
3
8mer+mismatch
240-259
0.009
3
XLOC_002542
hsa-miR-106a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004628
Biotype: transcript isomorph
Gene id: XLOC_002542
Gene Name: XLOC_002542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
616-630
0.031
1
7mer
383-394
0.006
0
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