LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RMST
hsa-miR-106a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538559
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2476-2496
0.013
1
7mer
2009-2026
0.013
9
7mer
792-810
0.006
2
6mer
2499-2520
0.005
0
6mer
1649-1663
0.003
3
UCKL1-AS1
hsa-miR-106a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_027287.1
Biotype: antisense
Gene id: NR_027287.1 (gene)
Gene Name: UCKL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-75
0.025
1
6mer
3446-3464
0.013
10
CTC-444N24.11
hsa-miR-106a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593427
Biotype: lincRNA
Gene id: ENSG00000268205
Gene Name: CTC-444N24.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2357-2368
0.011
1
6mer
3877-3893
0.005
1
8mer
468-492
0.005
0
6mer
3855-3881
0.004
1
6mer
3838-3857
0.004
1
6mer
754-758
0.004
0
6mer
445-464
0.003
0
6mer
2448-2475
0.001
0
SMC2-AS1
hsa-miR-106a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603487
Biotype: lincRNA
Gene id: ENSG00000270332
Gene Name: SMC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6914-6936
0.025
1
6mer
421-446
0.004
0
6mer
6148-6160
0.003
1
6mer
4386-4399
0.002
1
6mer
1808-1827
0.002
1
6mer
2646-2671
0.001
1
6mer
1736-1756
0.001
1
RP11-464F9.1
hsa-miR-106a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000399449
Biotype: processed_transcript
Gene id: ENSG00000242288
Gene Name: RP11-464F9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3459-3483
0.032
2
7mer
1098-1123
0.007
3
XLOC_008510
hsa-miR-106a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018230
Biotype: transcript isomorph
Gene id: XLOC_008510
Gene Name: XLOC_008510
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-455
0.033
0
7mer
674-688
0.003
0
6mer
650-666
0.002
1
RP11-532N4.2
hsa-miR-106a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587106
Biotype: antisense
Gene id: ENSG00000235535
Gene Name: RP11-532N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2841-2862
0.016
10
8mer
1170-1194
0.011
1
6mer
2384-2404
0.005
1
7mer
679-690
0.004
2
6mer
2515-2539
0.003
0
XLOC_005477
hsa-miR-106a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012606
Biotype: transcript isomorph
Gene id: XLOC_005477
Gene Name: XLOC_005477
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-39
0.024
1
8mer
135-156
0.015
1
CTC-471C19.1
hsa-miR-106a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564741
Biotype: lincRNA
Gene id: ENSG00000261037
Gene Name: CTC-471C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-226
0.020
0
7mer
744-758
0.008
0
6mer
26-51
0.005
1
6mer
77-103
0.003
0
6mer
1922-1939
0.002
0
RP11-171I2.1
hsa-miR-106a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-321
0.031
3
6mer
2042-2057
0.004
10
6mer
3225-3243
0.004
1
XLOC_009740
hsa-miR-106a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020413
Biotype: transcript isomorph
Gene id: XLOC_009740
Gene Name: XLOC_009740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-120
0.023
0
6mer
709-722
0.015
8
TPTEP1
hsa-miR-106a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000585784
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-292
0.039
0
BMS1P4
hsa-miR-106a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000580790
Biotype: processed_transcript
Gene id: ENSG00000271816
Gene Name: BMS1P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1561-1585
0.038
2
XLOC_013577
hsa-miR-106a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028233
Biotype: transcript isomorph
Gene id: XLOC_013577
Gene Name: XLOC_013577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1359-1378
0.028
1
6mer
134-158
0.005
0
6mer
1077-1103
0.005
1
TTTY5
hsa-miR-106a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000400581
Biotype: lincRNA
Gene id: ENSG00000215560
Gene Name: TTTY5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
113-133
0.019
0
6mer
121-145
0.019
0
XLOC_008330
hsa-miR-106a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017593
Biotype: transcript isomorph
Gene id: XLOC_008330
Gene Name: XLOC_008330
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
112-132
0.019
0
6mer
120-144
0.019
0
RP11-48B3.3
hsa-miR-106a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523871
Biotype: lincRNA
Gene id: ENSG00000254162
Gene Name: RP11-48B3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3243-3269
0.010
1
8mer
303-326
0.010
1
6mer
2592-2610
0.004
1
8mer
1715-1738
0.004
0
6mer
2148-2160
0.003
3
8mer
1151-1170
0.003
1
6mer
1245-1272
0.003
0
7mer
2110-2115
0.001
1
RP11-317J10.2
hsa-miR-106a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524052
Biotype: antisense
Gene id: ENSG00000253549
Gene Name: RP11-317J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-112
0.032
0
6mer
37-57
0.006
1
RP5-1139B12.2
hsa-miR-106a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602517
Biotype: antisense
Gene id: ENSG00000269890
Gene Name: RP5-1139B12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-30
0.014
1
7mer
813-837
0.010
0
8mer
2979-2998
0.005
0
6mer
636-663
0.005
1
6mer
1066-1087
0.002
1
6mer
802-827
0.002
1
RP11-206L10.9
hsa-miR-106a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587530
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
818-841
0.032
1
6mer
236-253
0.006
0
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