LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-231E6.1
hsa-miR-106a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1188-1212
0.029
1
6mer
75-102
0.007
1
6mer
1416-1438
0.003
0
RP11-582J16.4
hsa-miR-106a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514980
Biotype: antisense
Gene id: ENSG00000251034
Gene Name: RP11-582J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-164
0.026
1
9mer
451-472
0.009
Not Conserved
6mer
497-519
0.005
2
C1orf132
hsa-miR-106a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000487977
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3058-3076
0.020
9
8mer
669-688
0.013
1
7mer
359-383
0.007
1
XLOC_012382
hsa-miR-106a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025133
Biotype: transcript isomorph
Gene id: XLOC_012382
Gene Name: XLOC_012382
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-499
0.027
1
6mer
159-179
0.007
1
8mer
1755-1773
0.005
0
RP11-631N16.2
hsa-miR-106a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1089-1107
0.019
0
9mer
3833-3853
0.009
2
6mer
8505-8531
0.005
0
6mer
4760-4785
0.002
1
6mer
3266-3289
0.002
0
6mer
7356-7375
0.002
0
6mer
1841-1854
0.001
1
RP11-1L9.1
hsa-miR-106a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446964
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-324
0.040
1
DNMBP-AS1
hsa-miR-106a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434409
Biotype: antisense
Gene id: ENSG00000227695
Gene Name: DNMBP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2010-2024
0.027
1
8mer
1520-1543
0.005
0
8mer
1222-1245
0.004
1
6mer
1139-1163
0.003
1
RP11-96C23.14
hsa-miR-106a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444180
Biotype: processed_transcript
Gene id: ENSG00000272508
Gene Name: RP11-96C23.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-46
0.036
1
6mer
389-405
0.003
0
RP11-47I22.1
hsa-miR-106a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556543
Biotype: antisense
Gene id: ENSG00000258926
Gene Name: RP11-47I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-306
0.035
2
6mer
313-336
0.004
1
CTB-111F10.1
hsa-miR-106a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415249
Biotype: lincRNA
Gene id: ENSG00000223665
Gene Name: CTB-111F10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-370
0.027
1
6mer
118-137
0.007
4
6mer
287-307
0.006
0
RP11-680F8.1
hsa-miR-106a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
779-800
0.028
3
7mer
249-272
0.007
1
6mer
2081-2102
0.004
1
XLOC_004061
hsa-miR-106a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008568
Biotype: transcript isomorph
Gene id: XLOC_004061
Gene Name: XLOC_004061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-557
0.030
6
6mer
328-348
0.005
0
6mer
118-143
0.005
1
RP11-527J8.1
hsa-miR-106a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608144
Biotype: antisense
Gene id: ENSG00000273306
Gene Name: RP11-527J8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-505
0.039
2
XLOC_000695
hsa-miR-106a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-323
0.020
1
7mer
2927-2952
0.009
Not Conserved
8mer
2877-2894
0.008
1
7mer
2005-2024
0.003
0
CTD-2561J22.5
hsa-miR-106a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-501
0.014
1
6mer
3644-3662
0.006
1
7mer
2218-2234
0.005
1
6mer
3164-3185
0.005
1
6mer
2564-2584
0.004
1
6mer
1014-1035
0.004
1
6mer
2411-2424
0.001
0
LINC00665
hsa-miR-106a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590622
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
411-428
0.021
1
8mer
355-378
0.018
0
XLOC_009526
hsa-miR-106a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019734
Biotype: transcript isomorph
Gene id: XLOC_009526
Gene Name: XLOC_009526
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1038-1055
0.014
1
7mer
1130-1151
0.011
1
8mer
827-850
0.009
1
6mer
259-285
0.005
2
RP11-494M8.4
hsa-miR-106a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527847
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-269
0.010
1
7mer
390-410
0.010
1
6mer
572-591
0.007
3
6mer
787-809
0.005
4
6mer
1453-1472
0.003
1
7mer
1739-1762
0.002
0
6mer
1359-1382
0.002
1
XLOC_001576
hsa-miR-106a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004852
Biotype: transcript isomorph
Gene id: XLOC_001576
Gene Name: XLOC_001576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-45
0.039
1
HOXA-AS2
hsa-miR-106a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593438
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
468-482
0.035
1
6mer
457-474
0.004
0
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