LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
RP11-15H20.6
hsa-miR-106a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
607-625
0.014
1
6mer
62-78
0.010
0
6mer
1573-1594
0.009
1
6mer
534-550
0.009
1
7mer
1552-1579
0.006
1
FIRRE
hsa-miR-106a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000427391
Biotype: lincRNA
Gene id: ENSG00000213468
Gene Name: FIRRE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-49
0.031
1
9mer
2728-2748
0.016
1
7mer
1363-1382
0.003
1
XIST
hsa-miR-106a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18454-18475
0.010
2
7mer
9249-9262
0.006
3
7mer
2306-2319
0.006
1
7mer
8828-8853
0.004
1
7mer
8463-8479
0.004
0
8mer
14003-14026
0.004
1
6mer
1389-1409
0.003
1
6mer
6907-6926
0.003
1
6mer
10864-10876
0.002
0
6mer
16889-16910
0.002
Not Conserved
7mer
13189-13207
0.002
1
6mer
9095-9109
0.002
3
6mer
12501-12516
0.001
0
CTB-92J24.2
hsa-miR-106a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1328-1352
0.022
0
6mer
414-438
0.016
0
6mer
630-655
0.011
0
RP1-228P16.8
hsa-miR-106a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-238
0.042
7
7mer
46-58
0.007
1
XLOC_003242
hsa-miR-106a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006651
Biotype: transcript isomorph
Gene id: XLOC_003242
Gene Name: XLOC_003242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-25
0.042
1
6mer
208-230
0.005
0
6mer
344-359
0.002
Not Conserved
PWAR6
hsa-miR-106a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4226-4252
0.022
1
7mer
4576-4596
0.013
0
6mer
529-550
0.005
1
7mer
777-801
0.004
0
6mer
3015-3038
0.003
2
6mer
1758-1780
0.002
1
RP1-309I22.2
hsa-miR-106a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26268-26285
0.010
11
8mer
26963-26987
0.009
0
7mer
4386-4402
0.004
0
6mer
24417-24437
0.003
6
6mer
8770-8797
0.003
4
6mer
8480-8502
0.002
1
6mer
7926-7951
0.002
2
6mer
25739-25743
0.002
2
6mer
17040-17059
0.002
1
6mer
17400-17417
0.002
2
6mer
11527-11543
0.002
1
6mer
15588-15597
0.002
2
6mer
27591-27608
0.001
1
6mer
21087-21104
0.001
1
6mer
14433-14452
0.001
2
6mer
2710-2732
0.001
0
6mer
10708-10731
0.001
1
PROX1-AS1
hsa-miR-106a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
614-638
0.028
1
8mer
1948-1967
0.011
1
7mer
4303-4325
0.005
1
6mer
680-692
0.003
1
6mer
1918-1941
0.001
3
RP11-614F17.2
hsa-miR-106a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507933
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
30-46
0.026
1
6mer
12-38
0.022
1
LINC01492
hsa-miR-106a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425157
Biotype: lincRNA
Gene id: ENSG00000225564
Gene Name: LINC01492
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
379-402
0.030
5
7mer
117-133
0.014
1
6mer
301-325
0.004
2
MIR181A1HG
hsa-miR-106a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436880
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2224-2239
0.035
3
7mer
172-197
0.010
1
6mer
978-1003
0.002
2
RP11-216M21.7
hsa-miR-106a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2281-2302
0.017
0
6mer
922-949
0.012
0
6mer
737-758
0.010
0
6mer
2140-2165
0.008
0
XLOC_011038
hsa-miR-106a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022755
Biotype: transcript isomorph
Gene id: XLOC_011038
Gene Name: XLOC_011038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-283
0.037
10
6mer
319-339
0.010
9
LINC01024
hsa-miR-106a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522747
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-141
0.028
3
9mer
804-818
0.010
Not Conserved
8mer+mismatch
247-266
0.009
3
XLOC_001148
hsa-miR-106a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000111
Biotype: transcript isomorph
Gene id: XLOC_001148
Gene Name: XLOC_001148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2196-2211
0.035
3
7mer
144-169
0.010
1
6mer
950-975
0.002
2
AC009158.1
hsa-miR-106a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000452511
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-726
0.047
4
XLOC_007141
hsa-miR-106a-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
837-856
0.042
0
6mer
524-551
0.006
0
CTC-457E21.9
hsa-miR-106a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601860
Biotype: antisense
Gene id: ENSG00000268981
Gene Name: CTC-457E21.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-18
0.040
0
7mer
212-239
0.008
Not Conserved
XLOC_007089
hsa-miR-106a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1175-1197
0.028
1
6mer
11371-11383
0.009
0
6mer
804-825
0.004
0
6mer
998-1016
0.004
0
7mer
9353-9372
0.003
Not Conserved
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