LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106a-5p


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Gene
miRNA
Score
DIANA Links
UXT-AS1
hsa-miR-106a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000590504
Biotype: antisense
Gene id: ENSG00000267064
Gene Name: UXT-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-29
0.051
7
AC005019.3
hsa-miR-106a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434321
Biotype: lincRNA
Gene id: ENSG00000224330
Gene Name: AC005019.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-49
0.045
3
6mer
310-336
0.006
2
XLOC_012613
hsa-miR-106a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026244
Biotype: transcript isomorph
Gene id: XLOC_012613
Gene Name: XLOC_012613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-470
0.051
0
LINC00846
hsa-miR-106a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-306
0.051
1
XLOC_005332
hsa-miR-106a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011845
Biotype: transcript isomorph
Gene id: XLOC_005332
Gene Name: XLOC_005332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-187
0.032
1
8mer
1094-1121
0.018
0
CTD-2095E4.5
hsa-miR-106a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613639
Biotype: lincRNA
Gene id: ENSG00000277511
Gene Name: CTD-2095E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
813-828
0.024
0
6mer
648-659
0.009
0
6mer
681-690
0.009
0
6mer
737-754
0.008
0
RP11-282K24.3
hsa-miR-106a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5373-5390
0.013
0
9mer
4173-4194
0.012
0
6mer
5019-5041
0.007
1
7mer
4618-4638
0.007
1
7mer
581-599
0.006
1
6mer
292-314
0.003
0
6mer
2580-2599
0.002
0
LINC01135
hsa-miR-106a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419531
Biotype: lincRNA
Gene id: ENSG00000234807
Gene Name: LINC01135
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
872-896
0.050
4
XLOC_001716
hsa-miR-106a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003910
Biotype: transcript isomorph
Gene id: XLOC_001716
Gene Name: XLOC_001716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-163
0.023
0
7mer
569-591
0.015
3
6mer
1267-1286
0.008
6
6mer
767-786
0.004
1
LINC01422
hsa-miR-106a-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434868
Biotype: lincRNA
Gene id: ENSG00000223704
Gene Name: LINC01422
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5871-5897
0.024
1
7mer
5753-5778
0.007
1
7mer
2753-2774
0.007
9
9mer
1594-1602
0.005
Not Conserved
6mer
2924-2950
0.003
6
9mer
1311-1331
0.002
0
6mer
1214-1238
0.001
1
RP11-421L21.3
hsa-miR-106a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416329
Biotype: antisense
Gene id: ENSG00000233184
Gene Name: RP11-421L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
611-636
0.050
3
AGAP11
hsa-miR-106a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-180
0.042
1
6mer
990-1009
0.003
1
6mer
1250-1266
0.002
0
6mer
1927-1943
0.002
Not Conserved
6mer
2237-2256
0.001
0
6mer
1969-1981
0.000
Not Conserved
XLOC_005160
hsa-miR-106a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011687
Biotype: transcript isomorph
Gene id: XLOC_005160
Gene Name: XLOC_005160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-77
0.036
1
6mer
5488-5510
0.006
1
7mer
3463-3487
0.004
Not Conserved
6mer
2070-2091
0.002
1
6mer
3681-3701
0.001
1
RP11-555K2.4
hsa-miR-106a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624226
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-45
0.028
1
6mer
14-37
0.021
1
XLOC_011480
hsa-miR-106a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024123
Biotype: transcript isomorph
Gene id: XLOC_011480
Gene Name: XLOC_011480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-427
0.049
1
AC010974.3
hsa-miR-106a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450509
Biotype: antisense
Gene id: ENSG00000230065
Gene Name: AC010974.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-99
0.036
2
7mer
123-138
0.013
3
LINC00500
hsa-miR-106a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515860
Biotype: lincRNA
Gene id: ENSG00000249381
Gene Name: LINC00500
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-174
0.037
0
6mer
467-494
0.006
1
6mer
488-503
0.006
1
XLOC_007279
hsa-miR-106a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4359-4371
0.021
0
8mer
1536-1551
0.006
1
7mer
3645-3660
0.006
1
6mer
496-511
0.004
0
6mer
706-718
0.003
0
6mer
874-899
0.003
0
7mer
3952-3975
0.003
Not Conserved
6mer
1412-1428
0.002
2
6mer
3139-3158
0.002
1
RP11-111F5.3
hsa-miR-106a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448491
Biotype: lincRNA
Gene id: ENSG00000231212
Gene Name: RP11-111F5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
451-467
0.027
1
6mer
459-485
0.022
1
RP11-374M1.2
hsa-miR-106a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106a-5p
Sequence: aaaagugcuuacagugcagguag
MirBase ID: MIMAT0000103
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-173
0.049
0
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