LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
XLOC_003202
hsa-miR-1-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006580
Biotype: transcript isomorph
Gene id: XLOC_003202
Gene Name: XLOC_003202
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-217
0.028
1
7mer
291-313
0.019
1
6mer
2135-2152
0.002
3
XLOC_009323
hsa-miR-1-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3832-3848
0.046
3
7mer
1638-1652
0.003
1
PROX1-AS1
hsa-miR-1-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608138
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
422-444
0.049
3
XLOC_002100
hsa-miR-1-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002752
Biotype: transcript isomorph
Gene id: XLOC_002100
Gene Name: XLOC_002100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-265
0.019
2
7mer
874-892
0.010
1
7mer
2944-2966
0.009
1
6mer
153-172
0.007
2
6mer
2273-2284
0.003
3
CTD-2216M2.1
hsa-miR-1-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531681
Biotype: antisense
Gene id: ENSG00000254710
Gene Name: CTD-2216M2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
240-259
0.048
1
XLOC_004725
hsa-miR-1-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009596
Biotype: transcript isomorph
Gene id: XLOC_004725
Gene Name: XLOC_004725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-73
0.020
1
8mer
3443-3460
0.017
2
7mer
2400-2417
0.009
2
6mer
2893-2910
0.003
2
RP11-399K21.14
hsa-miR-1-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609200
Biotype: lincRNA
Gene id: ENSG00000272692
Gene Name: RP11-399K21.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1673-1689
0.021
0
8mer
1142-1157
0.013
0
6mer
1579-1587
0.011
5
6mer
542-560
0.004
0
XLOC_002720
hsa-miR-1-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006111
Biotype: transcript isomorph
Gene id: XLOC_002720
Gene Name: XLOC_002720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-487
0.020
1
7mer
268-282
0.019
0
6mer
337-359
0.005
1
6mer
230-251
0.004
0
XLOC_006757
hsa-miR-1-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014662
Biotype: transcript isomorph
Gene id: XLOC_006757
Gene Name: XLOC_006757
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1170-1188
0.037
1
7mer
804-824
0.007
1
6mer
667-684
0.004
1
RP11-324O2.3
hsa-miR-1-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598447
Biotype: antisense
Gene id: ENSG00000232934
Gene Name: RP11-324O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-668
0.048
2
RP3-412A9.17
hsa-miR-1-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5275-5298
0.043
8
7mer
8618-8625
0.003
1
6mer
6537-6557
0.002
4
RP11-16E18.3
hsa-miR-1-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569835
Biotype: lincRNA
Gene id: ENSG00000261542
Gene Name: RP11-16E18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-428
0.045
1
6mer
1412-1438
0.003
3
RP11-484D2.2
hsa-miR-1-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526220
Biotype: antisense
Gene id: ENSG00000254907
Gene Name: RP11-484D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-66
0.047
5
AC012146.7
hsa-miR-1-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570712
Biotype: antisense
Gene id: ENSG00000234327
Gene Name: AC012146.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
273-288
0.043
1
6mer
166-181
0.004
1
LL22NC03-86G7.1
hsa-miR-1-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36820-36846
0.006
1
8mer
17723-17742
0.004
2
6mer
37154-37168
0.004
3
8mer
15411-15424
0.003
0
7mer
26972-26990
0.003
1
7mer
16388-16410
0.003
1
7mer
14980-15000
0.003
2
7mer
30096-30110
0.003
1
7mer
35370-35388
0.002
1
6mer
28595-28619
0.002
0
6mer
36591-36612
0.002
1
7mer
34823-34839
0.002
0
6mer
15269-15287
0.002
1
6mer
11873-11892
0.002
1
6mer
21194-21200
0.001
1
6mer
29232-29251
0.001
0
6mer
35000-35012
0.001
0
6mer
31314-31323
0.001
Not Conserved
6mer
8900-8915
0.001
0
6mer
12888-12902
0.001
0
AC093375.1
hsa-miR-1-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428651
Biotype: lincRNA
Gene id: ENSG00000226383
Gene Name: AC093375.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1363-1375
0.039
1
7mer
1254-1270
0.008
1
XLOC_001612
hsa-miR-1-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002651
Biotype: transcript isomorph
Gene id: XLOC_001612
Gene Name: XLOC_001612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-111
0.047
0
KB-1183D5.18
hsa-miR-1-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624642
Biotype: lincRNA
Gene id: ENSG00000279920
Gene Name: KB-1183D5.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-216
0.047
0
PCAT18
hsa-miR-1-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579458
Biotype: lincRNA
Gene id: ENSG00000265369
Gene Name: PCAT18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2266-2272
0.032
1
7mer
499-520
0.011
0
6mer
1964-1978
0.003
3
XLOC_010279
hsa-miR-1-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1310-1327
0.016
0
6mer
2229-2249
0.013
0
6mer
2510-2527
0.011
0
6mer
1480-1505
0.007
0
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