LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
CYP4F26P
hsa-miR-1-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602933
Biotype: lincRNA
Gene id: ENSG00000226562
Gene Name: CYP4F26P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-342
0.051
0
RP4-568C11.4
hsa-miR-1-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
971-991
0.035
0
6mer
623-635
0.016
0
MKNK1-AS1
hsa-miR-1-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602433
Biotype: antisense
Gene id: ENSG00000269956
Gene Name: MKNK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-746
0.051
8
AC093627.7
hsa-miR-1-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465755
Biotype: lincRNA
Gene id: ENSG00000232325
Gene Name: AC093627.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-126
0.051
0
AC009518.8
hsa-miR-1-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453078
Biotype: antisense
Gene id: ENSG00000227197
Gene Name: AC009518.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
741-749
0.047
1
6mer
19-38
0.003
0
XLOC_013278
hsa-miR-1-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-46
0.033
0
6mer
929-940
0.009
0
6mer
692-706
0.008
0
LINC01271
hsa-miR-1-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441214
Biotype: lincRNA
Gene id: ENSG00000233077
Gene Name: LINC01271
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-779
0.040
9
6mer
765-785
0.006
7
6mer
593-618
0.005
7
RP11-706O15.7
hsa-miR-1-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000381105
Biotype: lincRNA
Gene id: ENSG00000205662
Gene Name: RP11-706O15.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1815-1836
0.046
1
6mer
1797-1821
0.005
1
ZNF571-AS1
hsa-miR-1-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588382
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-471
0.050
2
RP11-47L3.1
hsa-miR-1-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585387
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-264
0.036
0
6mer
218-240
0.014
0
PROX1-AS1
hsa-miR-1-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609140
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
396-418
0.050
3
UCA1
hsa-miR-1-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397381
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1815-1833
0.032
0
7mer
624-641
0.016
0
6mer
295-308
0.002
Not Conserved
XLOC_007336
hsa-miR-1-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015964
Biotype: transcript isomorph
Gene id: XLOC_007336
Gene Name: XLOC_007336
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-267
0.050
1
LINC01291
hsa-miR-1-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000377469
Biotype: lincRNA
Gene id: ENSG00000204792
Gene Name: LINC01291
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-106
0.025
3
7mer
3488-3507
0.016
2
7mer
781-787
0.005
0
6mer
2639-2651
0.003
2
ZNRF3-AS1
hsa-miR-1-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000325660
Biotype: antisense
Gene id: ENSG00000177993
Gene Name: ZNRF3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2126-2143
0.047
7
6mer
609-624
0.002
1
MCF2L-AS1
hsa-miR-1-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000446789
Biotype: antisense
Gene id: ENSG00000235280
Gene Name: MCF2L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-485
0.007
1
7mer
290-307
0.007
1
7mer
441-458
0.007
0
7mer
261-278
0.006
0
7mer
321-338
0.006
0
7mer
381-398
0.006
0
7mer
350-365
0.005
0
7mer
501-523
0.005
Not Conserved
RP11-344E13.3
hsa-miR-1-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433763
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-333
0.039
0
6mer
365-387
0.011
0
MYLK-AS1
hsa-miR-1-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485162
Biotype: antisense
Gene id: ENSG00000239523
Gene Name: MYLK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-96
0.035
1
6mer
517-541
0.012
11
6mer
40-57
0.003
1
RP13-638C3.4
hsa-miR-1-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576912
Biotype: antisense
Gene id: ENSG00000261845
Gene Name: RP13-638C3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
301-308
0.049
3
CTD-2636A23.2
hsa-miR-1-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000569313
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-317
0.032
2
7mer
472-485
0.014
6
6mer
311-324
0.003
2
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