LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
LINC00664
hsa-miR-1-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1722-1732
0.047
1
7mer
1264-1279
0.010
0
XLOC_007192
hsa-miR-1-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015149
Biotype: transcript isomorph
Gene id: XLOC_007192
Gene Name: XLOC_007192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
901-907
0.036
2
9mer
501-519
0.021
1
LOC646736
hsa-miR-1-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046102.1
Biotype: lincRNA
Gene id: NR_046102.1 (gene)
Gene Name: LOC646736
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-142
0.057
4
LINC00680
hsa-miR-1-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2430-2443
0.047
0
6mer
500-524
0.009
0
RP11-435J9.2
hsa-miR-1-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611703
Biotype: lincRNA
Gene id: ENSG00000274340
Gene Name: RP11-435J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-393
0.034
3
9mer
1194-1201
0.017
Not Conserved
6mer
7-32
0.005
2
PTENP1-AS
hsa-miR-1-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_103745.1
Biotype: lincRNA
Gene id: NR_103745.1 (gene)
Gene Name: PTENP1-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
707-729
0.056
1
XLOC_003764
hsa-miR-1-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007672
Biotype: transcript isomorph
Gene id: XLOC_003764
Gene Name: XLOC_003764
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-318
0.052
1
6mer
57-68
0.004
0
XLOC_014366
hsa-miR-1-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029694
Biotype: transcript isomorph
Gene id: XLOC_014366
Gene Name: XLOC_014366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-63
0.056
0
CTD-2044J15.1
hsa-miR-1-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503989
Biotype: lincRNA
Gene id: ENSG00000248677
Gene Name: CTD-2044J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-73
0.023
1
8mer
3137-3154
0.020
2
7mer
2094-2111
0.010
2
6mer
2587-2604
0.003
2
RP11-473M20.9
hsa-miR-1-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577123
Biotype: lincRNA
Gene id: ENSG00000262370
Gene Name: RP11-473M20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
948-965
0.055
0
RP11-281P23.2
hsa-miR-1-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515286
Biotype: lincRNA
Gene id: ENSG00000249631
Gene Name: RP11-281P23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
608-632
0.050
1
6mer
170-191
0.006
1
LINC00643
hsa-miR-1-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555934
Biotype: lincRNA
Gene id: ENSG00000186369
Gene Name: LINC00643
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
215-241
0.055
1
RP11-575F12.2
hsa-miR-1-3p
0.938
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535022
Biotype: lincRNA
Gene id: ENSG00000256001
Gene Name: RP11-575F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-171
0.049
1
6mer
15-33
0.006
0
LINC00661
hsa-miR-1-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000549354
Biotype: lincRNA
Gene id: ENSG00000205396
Gene Name: LINC00661
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2577-2601
0.052
1
6mer
938-944
0.003
0
INHBA-AS1
hsa-miR-1-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420821
Biotype: antisense
Gene id: ENSG00000224116
Gene Name: INHBA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1516-1527
0.043
1
8mer
497-514
0.011
0
LA16c-358B7.4
hsa-miR-1-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000339021
Biotype: antisense
Gene id: ENSG00000274751
Gene Name: LA16c-358B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3159-3172
0.003
0
6mer
3031-3046
0.002
0
6mer
3135-3150
0.002
0
6mer
2943-2958
0.002
0
7mer
2285-2296
0.002
Not Conserved
6mer
2967-2978
0.002
0
6mer
2837-2848
0.002
0
6mer
2909-2920
0.001
0
6mer
2873-2884
0.001
0
6mer
2893-2913
0.001
0
6mer
3115-3127
0.001
0
6mer
2857-2877
0.001
0
6mer
2761-2771
0.001
Not Conserved
6mer
2929-2947
0.001
Not Conserved
6mer
3011-3035
0.001
Not Conserved
6mer
2645-2660
0.001
Not Conserved
6mer
2206-2216
0.001
1
6mer
2745-2769
0.001
Not Conserved
6mer
2781-2791
0.001
Not Conserved
6mer
2106-2116
0.001
1
6mer
2709-2729
0.001
Not Conserved
6mer
2573-2597
0.001
Not Conserved
6mer
2625-2640
0.001
Not Conserved
6mer
2725-2749
0.001
Not Conserved
6mer
2685-2696
0.001
Not Conserved
6mer
2054-2065
0.001
1
6mer
2090-2110
0.001
1
6mer
2801-2821
0.001
Not Conserved
6mer
2038-2058
0.001
1
6mer
2553-2557
0.001
Not Conserved
6mer
2014-2024
0.001
0
6mer
2498-2524
0.001
Not Conserved
6mer
2418-2428
0.001
Not Conserved
6mer
2074-2094
0.001
1
6mer
2322-2333
0.001
0
6mer
2458-2468
0.001
Not Conserved
6mer
2533-2544
0.001
Not Conserved
6mer
2398-2408
0.001
Not Conserved
6mer
2478-2488
0.001
Not Conserved
6mer
2186-2190
0.001
0
6mer
2609-2629
0.001
Not Conserved
6mer
2270-2285
0.001
0
6mer
1970-1981
0.001
0
6mer
1930-1934
0.001
0
6mer
2362-2366
0.001
Not Conserved
6mer
2382-2402
0.001
Not Conserved
6mer
2165-2178
0.001
Not Conserved
6mer
2513-2524
0.001
Not Conserved
6mer
2342-2366
0.001
Not Conserved
6mer
2134-2154
0.001
Not Conserved
6mer
2442-2462
0.001
Not Conserved
LINC01272
hsa-miR-1-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000421019
Biotype: lincRNA
Gene id: ENSG00000224397
Gene Name: LINC01272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-445
0.054
6
RP11-293M10.2
hsa-miR-1-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555909
Biotype: antisense
Gene id: ENSG00000258820
Gene Name: RP11-293M10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-189
0.054
3
PROX1-AS1
hsa-miR-1-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413560
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
84-105
0.054
3
XLOC_004054
hsa-miR-1-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009112
Biotype: transcript isomorph
Gene id: XLOC_004054
Gene Name: XLOC_004054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-367
0.054
1
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