LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-1-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LINC00226
hsa-miR-1-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000618204
Biotype: lincRNA
Gene id: ENSG00000276210
Gene Name: LINC00226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-207
0.022
0
6mer
103-117
0.003
0
H19
hsa-miR-1-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000439725
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-105
0.025
2
DLEU2
hsa-miR-1-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000433070
Biotype: antisense
Gene id: ENSG00000231607
Gene Name: DLEU2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-223
0.025
1
CTD-2006C1.2
hsa-miR-1-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2568-2595
0.007
0
7mer
2676-2691
0.006
0
7mer
2035-2056
0.004
0
6mer
1061-1082
0.003
0
6mer
1321-1342
0.003
0
6mer
1909-1920
0.002
0
RP11-442N1.2
hsa-miR-1-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000563865
Biotype: lincRNA
Gene id: ENSG00000261763
Gene Name: RP11-442N1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-38
0.019
0
6mer
1053-1073
0.002
1
6mer
1122-1144
0.002
0
6mer
1936-1959
0.001
0
RP11-20G6.2
hsa-miR-1-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567395
Biotype: lincRNA
Gene id: ENSG00000261090
Gene Name: RP11-20G6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
678-702
0.022
1
6mer
539-543
0.003
1
STX18-AS1
hsa-miR-1-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502693
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-631
0.025
1
RP11-769N19.2
hsa-miR-1-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547084
Biotype: sense_intronic
Gene id: ENSG00000257880
Gene Name: RP11-769N19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
418-435
0.025
1
XLOC_004677
hsa-miR-1-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010208
Biotype: transcript isomorph
Gene id: XLOC_004677
Gene Name: XLOC_004677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1183-1196
0.013
0
7mer
1258-1275
0.008
Not Conserved
6mer
176-192
0.004
0
RP11-230C9.4
hsa-miR-1-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604082
Biotype: lincRNA
Gene id: ENSG00000271265
Gene Name: RP11-230C9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-401
0.019
3
6mer
226-246
0.006
2
CTD-2260A17.1
hsa-miR-1-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602972
Biotype: antisense
Gene id: ENSG00000248734
Gene Name: CTD-2260A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
732-758
0.025
9
H19
hsa-miR-1-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000412788
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-105
0.025
2
CSMD2-AS1
hsa-miR-1-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414868
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-498
0.025
1
AADACL2-AS1
hsa-miR-1-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475855
Biotype: antisense
Gene id: ENSG00000242908
Gene Name: AADACL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-195
0.025
2
RP11-46E17.8
hsa-miR-1-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624632
Biotype: lincRNA
Gene id: ENSG00000280391
Gene Name: RP11-46E17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
69-88
0.006
2
7mer
7031-7052
0.006
2
6mer
230-246
0.003
2
7mer
7456-7477
0.003
1
7mer
1239-1265
0.003
0
6mer
2859-2878
0.002
0
6mer
4026-4046
0.001
1
6mer
2654-2675
0.001
1
XLOC_005143
hsa-miR-1-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011660
Biotype: transcript isomorph
Gene id: XLOC_005143
Gene Name: XLOC_005143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1505-1523
0.016
0
7mer
521-538
0.005
Not Conserved
6mer
1588-1603
0.004
0
XLOC_009955
hsa-miR-1-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020656
Biotype: transcript isomorph
Gene id: XLOC_009955
Gene Name: XLOC_009955
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
851-876
0.011
0
6mer
134-148
0.008
0
6mer
1297-1316
0.006
0
RP11-513G11.2
hsa-miR-1-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440556
Biotype: lincRNA
Gene id: ENSG00000228271
Gene Name: RP11-513G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-434
0.025
3
RP11-80B9.1
hsa-miR-1-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413801
Biotype: antisense
Gene id: ENSG00000226919
Gene Name: RP11-80B9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-31
0.025
0
RP11-318G21.4
hsa-miR-1-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000435281
Biotype: lincRNA
Gene id: ENSG00000233379
Gene Name: RP11-318G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-136
0.017
0
6mer
232-250
0.008
3
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept